Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_G09
(622 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61619|S61A1_HUMAN Protein transport protein Sec61 alpha... 328 7e-90
sp|Q90ZM2|S61A1_BRARE Protein transport protein Sec61 alpha... 327 1e-89
sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 alpha... 327 1e-89
sp|Q98SN8|S61A2_ONCMY Protein transport protein Sec61 alpha... 327 1e-89
sp|P38377|S61A1_CANFA Protein transport protein Sec61 alpha... 326 3e-89
sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 alpha... 326 3e-89
sp|Q8AY36|SC61A_PAGBO Protein transport protein Sec61 alpha... 326 3e-89
sp|Q9JLR1|S61A2_MOUSE Protein transport protein Sec61 alpha... 325 7e-89
sp|Q8AY33|SC61A_BORSA Protein transport protein Sec61 alpha... 325 7e-89
sp|Q90YL4|S61A2_BRARE Protein transport protein Sec61 alpha... 325 7e-89
>sp|P61619|S61A1_HUMAN Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
alpha-1)
sp|P61621|S61A1_RAT Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
alpha-1)
sp|P61620|S61A1_MOUSE Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
alpha-1)
Length = 476
Score = 328 bits (841), Expect = 7e-90
Identities = 163/199 (81%), Positives = 181/199 (90%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 YPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG--SRSVPI 174
YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GNL+++LLGTWSD +G +R+ P+
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPV 338
Query: 175 GGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 354
GG+CYY+SPP+S ++ DPVH +YI FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQ
Sbjct: 339 GGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 355 MVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 534
MVMRGHRE SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF
Sbjct: 399 MVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 458
Query: 535 EIFVKEQNEMGGSMSTLLF 591
EIFVKEQ+E+ GSM LLF
Sbjct: 459 EIFVKEQSEV-GSMGALLF 476
>sp|Q90ZM2|S61A1_BRARE Protein transport protein Sec61 alpha subunit isoform A
Length = 476
Score = 327 bits (838), Expect = 1e-89
Identities = 162/199 (81%), Positives = 179/199 (89%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 YPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG--SRSVPI 174
YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD +G +R+ P+
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPV 338
Query: 175 GGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 354
GG+CYY+SPP+S ++ DPVH IYI FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQ
Sbjct: 339 GGLCYYLSPPESFGSVLDDPVHAVIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 355 MVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 534
MVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQYF
Sbjct: 399 MVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYF 458
Query: 535 EIFVKEQNEMGGSMSTLLF 591
EIFVKEQ+E+ GSM LLF
Sbjct: 459 EIFVKEQSEV-GSMGALLF 476
>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 alpha subunit
Length = 476
Score = 327 bits (838), Expect = 1e-89
Identities = 163/199 (81%), Positives = 177/199 (88%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 YPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG--SRSVPI 174
YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD G +R+ P+
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPV 338
Query: 175 GGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 354
GG+CYY SPP+S ++ DPVH IYI FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQ
Sbjct: 339 GGLCYYFSPPESFGSVLDDPVHASIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 355 MVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 534
MVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQYF
Sbjct: 399 MVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYF 458
Query: 535 EIFVKEQNEMGGSMSTLLF 591
EIFVKEQ+EM GSM LLF
Sbjct: 459 EIFVKEQSEM-GSMGALLF 476
>sp|Q98SN8|S61A2_ONCMY Protein transport protein Sec61 alpha subunit isoform B
Length = 476
Score = 327 bits (838), Expect = 1e-89
Identities = 162/199 (81%), Positives = 178/199 (89%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 YPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG--SRSVPI 174
YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD +G +R+ P+
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPV 338
Query: 175 GGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 354
GG+CYY SPP+S ++ DP+H IYI FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQ
Sbjct: 339 GGLCYYFSPPESFGSVLDDPIHAAIYICFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 355 MVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 534
MVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQYF
Sbjct: 399 MVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYF 458
Query: 535 EIFVKEQNEMGGSMSTLLF 591
EIFVKEQ+EM GSM LLF
Sbjct: 459 EIFVKEQSEM-GSMGALLF 476
>sp|P38377|S61A1_CANFA Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
alpha-1)
Length = 476
Score = 326 bits (836), Expect = 3e-89
Identities = 162/199 (81%), Positives = 181/199 (90%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 YPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG--SRSVPI 174
YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GNL+++LLGTWSD +G +R+ P+
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPV 338
Query: 175 GGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 354
GG+C+Y+SPP+S ++ DPVH +YI FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQ
Sbjct: 339 GGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 355 MVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 534
MVMRGHRE SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF
Sbjct: 399 MVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 458
Query: 535 EIFVKEQNEMGGSMSTLLF 591
EIFVKEQ+E+ GSM LLF
Sbjct: 459 EIFVKEQSEV-GSMGALLF 476
>sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 alpha subunit
sp|Q7T277|SC61A_DISMA Protein transport protein Sec61 alpha subunit
Length = 476
Score = 326 bits (836), Expect = 3e-89
Identities = 162/199 (81%), Positives = 178/199 (89%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 YPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG--SRSVPI 174
YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD +G +R+ P+
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPV 338
Query: 175 GGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 354
G+CYY+SPP+S ++ DPVH IYI FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQ
Sbjct: 339 AGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 355 MVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 534
MVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQYF
Sbjct: 399 MVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYF 458
Query: 535 EIFVKEQNEMGGSMSTLLF 591
EIFVKEQ+EM GSM LLF
Sbjct: 459 EIFVKEQSEM-GSMGALLF 476
>sp|Q8AY36|SC61A_PAGBO Protein transport protein Sec61 alpha subunit
sp|Q8AY35|SC61A_NOTAN Protein transport protein Sec61 alpha subunit
Length = 476
Score = 326 bits (836), Expect = 3e-89
Identities = 162/199 (81%), Positives = 178/199 (89%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 YPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG--SRSVPI 174
YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD +G +R+ P+
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPV 338
Query: 175 GGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 354
G+CYY+SPP+S ++ DPVH IYI FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQ
Sbjct: 339 AGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 355 MVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 534
MVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQYF
Sbjct: 399 MVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYF 458
Query: 535 EIFVKEQNEMGGSMSTLLF 591
EIFVKEQ+EM GSM LLF
Sbjct: 459 EIFVKEQSEM-GSMGALLF 476
>sp|Q9JLR1|S61A2_MOUSE Protein transport protein Sec61 alpha subunit isoform 2 (Sec61
alpha-2)
sp|Q9H9S3|S61A2_HUMAN Protein transport protein Sec61 alpha subunit isoform 2 (Sec61
alpha-2)
Length = 476
Score = 325 bits (832), Expect = 7e-89
Identities = 162/199 (81%), Positives = 178/199 (89%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 YPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG--SRSVPI 174
YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLG W+D G +RS P+
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPV 338
Query: 175 GGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 354
GG+CYY+SPP+S+ A+F DPVH +YI FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQ
Sbjct: 339 GGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 355 MVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 534
MVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF
Sbjct: 399 MVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 458
Query: 535 EIFVKEQNEMGGSMSTLLF 591
EIFVKEQ E+GG M L F
Sbjct: 459 EIFVKEQAEVGG-MGALFF 476
>sp|Q8AY33|SC61A_BORSA Protein transport protein Sec61 alpha subunit
Length = 476
Score = 325 bits (832), Expect = 7e-89
Identities = 162/199 (81%), Positives = 177/199 (88%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 YPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG--SRSVPI 174
YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN I+NLLGTWSD G +R+ P+
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFIVNLLGTWSDTSTGGPARAYPV 338
Query: 175 GGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 354
GG+CY++SPP+S ++ DPVH IYI FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQ
Sbjct: 339 GGLCYFLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 355 MVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 534
MVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQYF
Sbjct: 399 MVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYF 458
Query: 535 EIFVKEQNEMGGSMSTLLF 591
EIFVKEQ+EM GSM L F
Sbjct: 459 EIFVKEQSEM-GSMGGLFF 476
>sp|Q90YL4|S61A2_BRARE Protein transport protein Sec61 alpha subunit isoform B
Length = 476
Score = 325 bits (832), Expect = 7e-89
Identities = 160/199 (80%), Positives = 177/199 (88%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 YPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG--SRSVPI 174
YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD G +R+ P+
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPV 338
Query: 175 GGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 354
GG+CYY+SPP+S + DP+H IYI FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQQ
Sbjct: 339 GGLCYYLSPPESFGTVLEDPIHAIIYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 355 MVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 534
MVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQYF
Sbjct: 399 MVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYF 458
Query: 535 EIFVKEQNEMGGSMSTLLF 591
EIFVKEQ+E+ GS+ LLF
Sbjct: 459 EIFVKEQSEV-GSVGALLF 476
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,255,440
Number of Sequences: 369166
Number of extensions: 1705577
Number of successful extensions: 6039
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5984
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)