Planaria EST Database

DrC_00390

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00390
         (377 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P60467|SC61B_CANFA  Protein transport protein Sec61 beta ...   101   6e-22
sp|Q9CQS8|SC61B_MOUSE  Protein transport protein Sec61 beta ...   100   1e-21
sp|P38389|SC61B_ARATH  Protein transport protein Sec61 beta ...    53   2e-07
sp|O43002|SC61B_SCHPO  Prpbable protein transport protein se...    50   2e-06
sp|Q9HFC7|SC61B_YARLI  Protein transport protein SEC61 beta ...    42   6e-04
sp|Q5JDK7|SECG_PYRKO  Preprotein translocase secG subunit (P...    37   0.011
sp|Q8J2P4|SC61B_KLULA  Protein transport protein SEC61 beta ...    36   0.024
sp|P52871|SC6B2_YEAST  Protein transport protein SEC61 beta ...    34   0.091
sp|Q9NUK0|MBN3_HUMAN  Muscleblind-like X-linked protein (Mus...    33   0.26 
sp|Q9Y4K1|AIM1_HUMAN  Absent in melanoma 1 protein                 31   1.0  

>sp|P60467|SC61B_CANFA Protein transport protein Sec61 beta subunit
 sp|P60468|SC61B_HUMAN Protein transport protein Sec61 beta subunit
          Length = 96

 Score =  101 bits (251), Expect = 6e-22
 Identities = 57/99 (57%), Positives = 61/99 (61%)
 Frame = +3

Query: 48  MAGPASSSTVGGGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWR 227
           M GP  S T  G    S     A R AGST   +QRK   S   R            MWR
Sbjct: 1   MPGPTPSGTNVGSSGRSPSKAVAARAAGSTV--RQRK-NASCGTRSAGRTTSAGTGGMWR 57

Query: 228 FYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYTRS 344
           FYTEDSPG+KVGPVPVLVMS+LFIASVF+LHIWGKYTRS
Sbjct: 58  FYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 beta subunit
          Length = 96

 Score =  100 bits (248), Expect = 1e-21
 Identities = 56/99 (56%), Positives = 61/99 (61%)
 Frame = +3

Query: 48  MAGPASSSTVGGGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWR 227
           M GP  S T  G    S     A R AGST   +QRK   S   R            MWR
Sbjct: 1   MPGPTPSGTNVGSSGRSPSKAVAARAAGSTV--RQRK-NASCGTRSAGRTTSAGTGGMWR 57

Query: 228 FYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYTRS 344
           FYTEDSPG+KVGPVPVLVMS+LFIA+VF+LHIWGKYTRS
Sbjct: 58  FYTEDSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96

>sp|P38389|SC61B_ARATH Protein transport protein Sec61 beta subunit
          Length = 82

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 29/74 (39%), Positives = 42/74 (56%)
 Frame = +3

Query: 111 PAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKVGPVPVLVMSV 290
           P   +A +TA  ++RK T  A               M +FYT+D+PG+K+ P  VL+MS+
Sbjct: 7   PQRGSAAATASMRRRKPTSGA---GGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMSI 63

Query: 291 LFIASVFLLHIWGK 332
            FIA V +LH+ GK
Sbjct: 64  GFIAFVAVLHVMGK 77

>sp|O43002|SC61B_SCHPO Prpbable protein transport protein sec61 beta subunit
          Length = 102

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 34/90 (37%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = +3

Query: 66  SSTVGGGR----AASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFY 233
           SST   G     AAS    P  +     A  K  K + S P              + + Y
Sbjct: 2   SSTKASGSVKNSAASAPGGPKSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLKLY 61

Query: 234 TEDSPGIKVGPVPVLVMSVLFIASVFLLHI 323
           T+++ G KV PV V+V+SV FIASVFLLHI
Sbjct: 62  TDEASGFKVDPVVVMVLSVGFIASVFLLHI 91

>sp|Q9HFC7|SC61B_YARLI Protein transport protein SEC61 beta subunit
          Length = 91

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 32/90 (35%), Positives = 40/90 (44%)
 Frame = +3

Query: 63  SSSTVGGGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTED 242
           S+   GG  A   R   A R     A A QR      P              M + YT++
Sbjct: 4   SAQVPGGPAAQMKRRNNAQR---QEAKASQR------PTSTRSVGAGGSSSTMLKLYTDE 54

Query: 243 SPGIKVGPVPVLVMSVLFIASVFLLHIWGK 332
           S G+KV PV V+V+S+ FI SV  LHI  K
Sbjct: 55  SQGLKVDPVVVMVLSLGFIFSVVALHILAK 84

>sp|Q5JDK7|SECG_PYRKO Preprotein translocase secG subunit (Protein transport protein
           SEC61 beta subunit homolog)
          Length = 56

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +3

Query: 219 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWG 329
           + RF+ ED+  +KV P  V+ +++L IA  F+LH++G
Sbjct: 15  LMRFFDEDTRAVKVSPKGVIALTLLLIAFEFILHMFG 51

>sp|Q8J2P4|SC61B_KLULA Protein transport protein SEC61 beta subunit
          Length = 88

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 23/89 (25%), Positives = 37/89 (41%)
 Frame = +3

Query: 66  SSTVGGGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDS 245
           SS  GG R    R           A  ++ K     P              + + YT+++
Sbjct: 3   SSVPGGQRTLQKRRN---------AQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEA 53

Query: 246 PGIKVGPVPVLVMSVLFIASVFLLHIWGK 332
            G++V P+ VL ++V F+ SV  LH+  K
Sbjct: 54  NGLRVDPLVVLFLAVAFVFSVVALHVVAK 82

>sp|P52871|SC6B2_YEAST Protein transport protein SEC61 beta 2 subunit
          Length = 88

 Score = 34.3 bits (77), Expect = 0.091
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 225 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYT 338
           + YT+++ G +V  + VL +SV FI SV  LH+  K+T
Sbjct: 48  KLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT 85

>sp|Q9NUK0|MBN3_HUMAN Muscleblind-like X-linked protein (Muscleblind-like protein 3)
           (Cys3His CCG1-required protein) (HCHCR protein)
          Length = 354

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -2

Query: 262 PTLIPGESSV*NLHIPAPELPPPGAVVLLGADPVAFLCLAPA--VDPAVLGAGVALFDAA 89
           PT+   + ++ NL +P P   P G +          LC+APA  + P + GA      AA
Sbjct: 285 PTVFHCQQALTNLQLPQPAFIPAGPI----------LCMAPASNIVPMMHGATPTTVSAA 334

Query: 88  LPPPTVLELAGP 53
             P T +  A P
Sbjct: 335 TTPATSVPFAAP 346

>sp|Q9Y4K1|AIM1_HUMAN Absent in melanoma 1 protein
          Length = 1723

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 57  PASSSTVGGGRAASNRATPAPRTAGSTAGAKQRKATGSAPKR 182
           PASS T   GR+ +  A PAP  +G  A AK+     S PKR
Sbjct: 100 PASSPTKRKGRSRALEAVPAPPASGPRAPAKE-----SPPKR 136

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,671,326
Number of Sequences: 369166
Number of extensions: 795650
Number of successful extensions: 3584
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3577
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00390

  1. Dr_sW_010_I11
  2. Dr_sW_016_E22
  3. Dr_sW_007_O13
  4. Dr_sW_010_E06
  5. Dr_sW_015_M23
  6. Dr_sW_024_A13