Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_I11
(377 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P60467|SC61B_CANFA Protein transport protein Sec61 beta ... 101 6e-22
sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 beta ... 100 1e-21
sp|P38389|SC61B_ARATH Protein transport protein Sec61 beta ... 53 2e-07
sp|O43002|SC61B_SCHPO Prpbable protein transport protein se... 50 2e-06
sp|Q9HFC7|SC61B_YARLI Protein transport protein SEC61 beta ... 42 6e-04
sp|Q5JDK7|SECG_PYRKO Preprotein translocase secG subunit (P... 37 0.011
sp|Q8J2P4|SC61B_KLULA Protein transport protein SEC61 beta ... 36 0.024
sp|P52871|SC6B2_YEAST Protein transport protein SEC61 beta ... 34 0.091
sp|Q9NUK0|MBN3_HUMAN Muscleblind-like X-linked protein (Mus... 33 0.26
sp|Q9Y4K1|AIM1_HUMAN Absent in melanoma 1 protein 31 1.0
>sp|P60467|SC61B_CANFA Protein transport protein Sec61 beta subunit
sp|P60468|SC61B_HUMAN Protein transport protein Sec61 beta subunit
Length = 96
Score = 101 bits (251), Expect = 6e-22
Identities = 57/99 (57%), Positives = 61/99 (61%)
Frame = +3
Query: 48 MAGPASSSTVGGGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWR 227
M GP S T G S A R AGST +QRK S R MWR
Sbjct: 1 MPGPTPSGTNVGSSGRSPSKAVAARAAGSTV--RQRK-NASCGTRSAGRTTSAGTGGMWR 57
Query: 228 FYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYTRS 344
FYTEDSPG+KVGPVPVLVMS+LFIASVF+LHIWGKYTRS
Sbjct: 58 FYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 beta subunit
Length = 96
Score = 100 bits (248), Expect = 1e-21
Identities = 56/99 (56%), Positives = 61/99 (61%)
Frame = +3
Query: 48 MAGPASSSTVGGGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWR 227
M GP S T G S A R AGST +QRK S R MWR
Sbjct: 1 MPGPTPSGTNVGSSGRSPSKAVAARAAGSTV--RQRK-NASCGTRSAGRTTSAGTGGMWR 57
Query: 228 FYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYTRS 344
FYTEDSPG+KVGPVPVLVMS+LFIA+VF+LHIWGKYTRS
Sbjct: 58 FYTEDSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96
>sp|P38389|SC61B_ARATH Protein transport protein Sec61 beta subunit
Length = 82
Score = 53.1 bits (126), Expect = 2e-07
Identities = 29/74 (39%), Positives = 42/74 (56%)
Frame = +3
Query: 111 PAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKVGPVPVLVMSV 290
P +A +TA ++RK T A M +FYT+D+PG+K+ P VL+MS+
Sbjct: 7 PQRGSAAATASMRRRKPTSGA---GGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMSI 63
Query: 291 LFIASVFLLHIWGK 332
FIA V +LH+ GK
Sbjct: 64 GFIAFVAVLHVMGK 77
>sp|O43002|SC61B_SCHPO Prpbable protein transport protein sec61 beta subunit
Length = 102
Score = 50.1 bits (118), Expect = 2e-06
Identities = 34/90 (37%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +3
Query: 66 SSTVGGGR----AASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFY 233
SST G AAS P + A K K + S P + + Y
Sbjct: 2 SSTKASGSVKNSAASAPGGPKSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLKLY 61
Query: 234 TEDSPGIKVGPVPVLVMSVLFIASVFLLHI 323
T+++ G KV PV V+V+SV FIASVFLLHI
Sbjct: 62 TDEASGFKVDPVVVMVLSVGFIASVFLLHI 91
>sp|Q9HFC7|SC61B_YARLI Protein transport protein SEC61 beta subunit
Length = 91
Score = 41.6 bits (96), Expect = 6e-04
Identities = 32/90 (35%), Positives = 40/90 (44%)
Frame = +3
Query: 63 SSSTVGGGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTED 242
S+ GG A R A R A A QR P M + YT++
Sbjct: 4 SAQVPGGPAAQMKRRNNAQR---QEAKASQR------PTSTRSVGAGGSSSTMLKLYTDE 54
Query: 243 SPGIKVGPVPVLVMSVLFIASVFLLHIWGK 332
S G+KV PV V+V+S+ FI SV LHI K
Sbjct: 55 SQGLKVDPVVVMVLSLGFIFSVVALHILAK 84
>sp|Q5JDK7|SECG_PYRKO Preprotein translocase secG subunit (Protein transport protein
SEC61 beta subunit homolog)
Length = 56
Score = 37.4 bits (85), Expect = 0.011
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +3
Query: 219 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWG 329
+ RF+ ED+ +KV P V+ +++L IA F+LH++G
Sbjct: 15 LMRFFDEDTRAVKVSPKGVIALTLLLIAFEFILHMFG 51
>sp|Q8J2P4|SC61B_KLULA Protein transport protein SEC61 beta subunit
Length = 88
Score = 36.2 bits (82), Expect = 0.024
Identities = 23/89 (25%), Positives = 37/89 (41%)
Frame = +3
Query: 66 SSTVGGGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDS 245
SS GG R R A ++ K P + + YT+++
Sbjct: 3 SSVPGGQRTLQKRRN---------AQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEA 53
Query: 246 PGIKVGPVPVLVMSVLFIASVFLLHIWGK 332
G++V P+ VL ++V F+ SV LH+ K
Sbjct: 54 NGLRVDPLVVLFLAVAFVFSVVALHVVAK 82
>sp|P52871|SC6B2_YEAST Protein transport protein SEC61 beta 2 subunit
Length = 88
Score = 34.3 bits (77), Expect = 0.091
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 225 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYT 338
+ YT+++ G +V + VL +SV FI SV LH+ K+T
Sbjct: 48 KLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT 85
>sp|Q9NUK0|MBN3_HUMAN Muscleblind-like X-linked protein (Muscleblind-like protein 3)
(Cys3His CCG1-required protein) (HCHCR protein)
Length = 354
Score = 32.7 bits (73), Expect = 0.26
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 262 PTLIPGESSV*NLHIPAPELPPPGAVVLLGADPVAFLCLAPA--VDPAVLGAGVALFDAA 89
PT+ + ++ NL +P P P G + LC+APA + P + GA AA
Sbjct: 285 PTVFHCQQALTNLQLPQPAFIPAGPI----------LCMAPASNIVPMMHGATPTTVSAA 334
Query: 88 LPPPTVLELAGP 53
P T + A P
Sbjct: 335 TTPATSVPFAAP 346
>sp|Q9Y4K1|AIM1_HUMAN Absent in melanoma 1 protein
Length = 1723
Score = 30.8 bits (68), Expect = 1.0
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +3
Query: 57 PASSSTVGGGRAASNRATPAPRTAGSTAGAKQRKATGSAPKR 182
PASS T GR+ + A PAP +G A AK+ S PKR
Sbjct: 100 PASSPTKRKGRSRALEAVPAPPASGPRAPAKE-----SPPKR 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,671,326
Number of Sequences: 369166
Number of extensions: 795650
Number of successful extensions: 3584
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3577
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)