Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_M23
(257 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P60467|SC61B_CANFA Protein transport protein Sec61 beta ... 90 1e-18
sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 beta ... 89 3e-18
sp|P38389|SC61B_ARATH Protein transport protein Sec61 beta ... 52 3e-07
sp|O43002|SC61B_SCHPO Prpbable protein transport protein se... 48 8e-06
sp|Q9HFC7|SC61B_YARLI Protein transport protein SEC61 beta ... 41 7e-04
sp|Q5JDK7|SECG_PYRKO Preprotein translocase secG subunit (P... 37 0.011
sp|Q8J2P4|SC61B_KLULA Protein transport protein SEC61 beta ... 35 0.053
sp|P52871|SC6B2_YEAST Protein transport protein SEC61 beta ... 34 0.090
sp|O94713|MEU27_SCHPO Meiotic expression up-regulated prote... 30 1.7
sp|P50795|VL2_HPV21 Minor capsid protein L2 29 2.9
>sp|P60467|SC61B_CANFA Protein transport protein Sec61 beta subunit
sp|P60468|SC61B_HUMAN Protein transport protein Sec61 beta subunit
Length = 96
Score = 90.1 bits (222), Expect = 1e-18
Identities = 48/73 (65%), Positives = 52/73 (71%)
Frame = +3
Query: 6 AGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKVGPVPVLVMSVLFIAS 185
AGST +QRK S R MWRFYTEDSPG+KVGPVPVLVMS+LFIAS
Sbjct: 27 AGSTV--RQRK-NASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIAS 83
Query: 186 VFLLHIWGKYTRS 224
VF+LHIWGKYTRS
Sbjct: 84 VFMLHIWGKYTRS 96
>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 beta subunit
Length = 96
Score = 89.0 bits (219), Expect = 3e-18
Identities = 47/73 (64%), Positives = 52/73 (71%)
Frame = +3
Query: 6 AGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKVGPVPVLVMSVLFIAS 185
AGST +QRK S R MWRFYTEDSPG+KVGPVPVLVMS+LFIA+
Sbjct: 27 AGSTV--RQRK-NASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIAA 83
Query: 186 VFLLHIWGKYTRS 224
VF+LHIWGKYTRS
Sbjct: 84 VFMLHIWGKYTRS 96
>sp|P38389|SC61B_ARATH Protein transport protein Sec61 beta subunit
Length = 82
Score = 52.4 bits (124), Expect = 3e-07
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = +3
Query: 3 TAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKVGPVPVLVMSVLFIA 182
+A +TA ++RK T A M +FYT+D+PG+K+ P VL+MS+ FIA
Sbjct: 11 SAAATASMRRRKPTSGA---GGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMSIGFIA 67
Query: 183 SVFLLHIWGK 212
V +LH+ GK
Sbjct: 68 FVAVLHVMGK 77
>sp|O43002|SC61B_SCHPO Prpbable protein transport protein sec61 beta subunit
Length = 102
Score = 47.8 bits (112), Expect = 8e-06
Identities = 28/62 (45%), Positives = 36/62 (58%)
Frame = +3
Query: 18 AGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLL 197
AGA+ A GS P + + YT+++ G KV PV V+V+SV FIASVFLL
Sbjct: 43 AGARAAGAPGSTPT-------------LLKLYTDEASGFKVDPVVVMVLSVGFIASVFLL 89
Query: 198 HI 203
HI
Sbjct: 90 HI 91
>sp|Q9HFC7|SC61B_YARLI Protein transport protein SEC61 beta subunit
Length = 91
Score = 41.2 bits (95), Expect = 7e-04
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +3
Query: 99 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGK 212
M + YT++S G+KV PV V+V+S+ FI SV LHI K
Sbjct: 47 MLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAK 84
>sp|Q5JDK7|SECG_PYRKO Preprotein translocase secG subunit (Protein transport protein
SEC61 beta subunit homolog)
Length = 56
Score = 37.4 bits (85), Expect = 0.011
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +3
Query: 99 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWG 209
+ RF+ ED+ +KV P V+ +++L IA F+LH++G
Sbjct: 15 LMRFFDEDTRAVKVSPKGVIALTLLLIAFEFILHMFG 51
>sp|Q8J2P4|SC61B_KLULA Protein transport protein SEC61 beta subunit
Length = 88
Score = 35.0 bits (79), Expect = 0.053
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +3
Query: 105 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGK 212
+ YT+++ G++V P+ VL ++V F+ SV LH+ K
Sbjct: 47 KLYTDEANGLRVDPLVVLFLAVAFVFSVVALHVVAK 82
>sp|P52871|SC6B2_YEAST Protein transport protein SEC61 beta 2 subunit
Length = 88
Score = 34.3 bits (77), Expect = 0.090
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 105 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYT 218
+ YT+++ G +V + VL +SV FI SV LH+ K+T
Sbjct: 48 KLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT 85
>sp|O94713|MEU27_SCHPO Meiotic expression up-regulated protein 27
Length = 736
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 245 IYYKKLRASGVFTPNMKQEY-RSNE*YTHNQDWNWTNFNS 129
I Y +++ SG F P+ QE +SN TH +WT+F S
Sbjct: 5 IAYPEIKISGAFRPDKIQEKGKSNRCDTHCSGSSWTSFKS 44
>sp|P50795|VL2_HPV21 Minor capsid protein L2
Length = 520
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 148 TGPTLIPGE-SSV*NLHIPAPELPPPGAVVLLGAD-PVAFLCLAPAVDP 8
TGP L+PGE ++ +H P P PPP V + A L +AP P
Sbjct: 124 TGPDLLPGEVETIAEIH-PGPTRPPPDTAVTTSTNGSSAVLEVAPEPTP 171
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,980,925
Number of Sequences: 369166
Number of extensions: 525593
Number of successful extensions: 1955
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1955
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)