Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_E06
(211 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P60467|SC61B_CANFA Protein transport protein Sec61 beta ... 88 5e-18
sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 beta ... 87 1e-17
sp|P38389|SC61B_ARATH Protein transport protein Sec61 beta ... 49 4e-06
sp|O43002|SC61B_SCHPO Prpbable protein transport protein se... 45 5e-05
sp|Q9HFC7|SC61B_YARLI Protein transport protein SEC61 beta ... 41 7e-04
sp|Q5JDK7|SECG_PYRKO Preprotein translocase secG subunit (P... 37 0.011
sp|Q8J2P4|SC61B_KLULA Protein transport protein SEC61 beta ... 35 0.054
sp|P52871|SC6B2_YEAST Protein transport protein SEC61 beta ... 34 0.091
sp|O94713|MEU27_SCHPO Meiotic expression up-regulated prote... 30 1.7
sp|Q975W7|SECG_SULTO Preprotein translocase secG subunit (P... 29 3.8
>sp|P60467|SC61B_CANFA Protein transport protein Sec61 beta subunit
sp|P60468|SC61B_HUMAN Protein transport protein Sec61 beta subunit
Length = 96
Score = 88.2 bits (217), Expect = 5e-18
Identities = 39/42 (92%), Positives = 42/42 (100%)
Frame = +2
Query: 53 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYTRS 178
MWRFYTEDSPG+KVGPVPVLVMS+LFIASVF+LHIWGKYTRS
Sbjct: 55 MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 beta subunit
Length = 96
Score = 87.0 bits (214), Expect = 1e-17
Identities = 38/42 (90%), Positives = 42/42 (100%)
Frame = +2
Query: 53 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYTRS 178
MWRFYTEDSPG+KVGPVPVLVMS+LFIA+VF+LHIWGKYTRS
Sbjct: 55 MWRFYTEDSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96
>sp|P38389|SC61B_ARATH Protein transport protein Sec61 beta subunit
Length = 82
Score = 48.9 bits (115), Expect = 4e-06
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +2
Query: 53 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGK 166
M +FYT+D+PG+K+ P VL+MS+ FIA V +LH+ GK
Sbjct: 40 MLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77
>sp|O43002|SC61B_SCHPO Prpbable protein transport protein sec61 beta subunit
Length = 102
Score = 45.1 bits (105), Expect = 5e-05
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2
Query: 59 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHI 157
+ YT+++ G KV PV V+V+SV FIASVFLLHI
Sbjct: 59 KLYTDEASGFKVDPVVVMVLSVGFIASVFLLHI 91
>sp|Q9HFC7|SC61B_YARLI Protein transport protein SEC61 beta subunit
Length = 91
Score = 41.2 bits (95), Expect = 7e-04
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +2
Query: 53 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGK 166
M + YT++S G+KV PV V+V+S+ FI SV LHI K
Sbjct: 47 MLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAK 84
>sp|Q5JDK7|SECG_PYRKO Preprotein translocase secG subunit (Protein transport protein
SEC61 beta subunit homolog)
Length = 56
Score = 37.4 bits (85), Expect = 0.011
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +2
Query: 53 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWG 163
+ RF+ ED+ +KV P V+ +++L IA F+LH++G
Sbjct: 15 LMRFFDEDTRAVKVSPKGVIALTLLLIAFEFILHMFG 51
>sp|Q8J2P4|SC61B_KLULA Protein transport protein SEC61 beta subunit
Length = 88
Score = 35.0 bits (79), Expect = 0.054
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +2
Query: 59 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGK 166
+ YT+++ G++V P+ VL ++V F+ SV LH+ K
Sbjct: 47 KLYTDEANGLRVDPLVVLFLAVAFVFSVVALHVVAK 82
>sp|P52871|SC6B2_YEAST Protein transport protein SEC61 beta 2 subunit
Length = 88
Score = 34.3 bits (77), Expect = 0.091
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 59 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYT 172
+ YT+++ G +V + VL +SV FI SV LH+ K+T
Sbjct: 48 KLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT 85
>sp|O94713|MEU27_SCHPO Meiotic expression up-regulated protein 27
Length = 736
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 199 IYYKKLRASGVFTPNMKQEY-RSNE*YTHNQDWNWTNFNS 83
I Y +++ SG F P+ QE +SN TH +WT+F S
Sbjct: 5 IAYPEIKISGAFRPDKIQEKGKSNRCDTHCSGSSWTSFKS 44
>sp|Q975W7|SECG_SULTO Preprotein translocase secG subunit (Protein transport protein
SEC61 beta subunit homolog)
Length = 58
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 59 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHI 157
R+Y E++ IK+ P ++++S++ +A V + I
Sbjct: 21 RYYEEENEKIKISPKLLIIISIIMVAGVIVASI 53
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,699,354
Number of Sequences: 369166
Number of extensions: 435806
Number of successful extensions: 1707
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)