Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_A13
(303 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P60467|SC61B_CANFA Protein transport protein Sec61 beta ... 94 1e-19
sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 beta ... 93 2e-19
sp|P38389|SC61B_ARATH Protein transport protein Sec61 beta ... 53 2e-07
sp|O43002|SC61B_SCHPO Prpbable protein transport protein se... 50 2e-06
sp|Q9HFC7|SC61B_YARLI Protein transport protein SEC61 beta ... 41 8e-04
sp|Q5JDK7|SECG_PYRKO Preprotein translocase secG subunit (P... 37 0.011
sp|Q8J2P4|SC61B_KLULA Protein transport protein SEC61 beta ... 35 0.054
sp|P52871|SC6B2_YEAST Protein transport protein SEC61 beta ... 34 0.093
sp|O94713|MEU27_SCHPO Meiotic expression up-regulated prote... 30 1.7
sp|P50795|VL2_HPV21 Minor capsid protein L2 29 3.0
>sp|P60467|SC61B_CANFA Protein transport protein Sec61 beta subunit
sp|P60468|SC61B_HUMAN Protein transport protein Sec61 beta subunit
Length = 96
Score = 94.0 bits (232), Expect = 1e-19
Identities = 52/88 (59%), Positives = 56/88 (63%)
Frame = +1
Query: 7 GGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKV 186
G S A R AGST +QRK S R MWRFYTEDSPG+KV
Sbjct: 12 GSSGRSPSKAVAARAAGSTV--RQRK-NASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKV 68
Query: 187 GPVPVLVMSVLFIASVFLLHIWGKYTRS 270
GPVPVLVMS+LFIASVF+LHIWGKYTRS
Sbjct: 69 GPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 beta subunit
Length = 96
Score = 92.8 bits (229), Expect = 2e-19
Identities = 51/88 (57%), Positives = 56/88 (63%)
Frame = +1
Query: 7 GGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKV 186
G S A R AGST +QRK S R MWRFYTEDSPG+KV
Sbjct: 12 GSSGRSPSKAVAARAAGSTV--RQRK-NASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKV 68
Query: 187 GPVPVLVMSVLFIASVFLLHIWGKYTRS 270
GPVPVLVMS+LFIA+VF+LHIWGKYTRS
Sbjct: 69 GPVPVLVMSLLFIAAVFMLHIWGKYTRS 96
>sp|P38389|SC61B_ARATH Protein transport protein Sec61 beta subunit
Length = 82
Score = 53.1 bits (126), Expect = 2e-07
Identities = 29/74 (39%), Positives = 42/74 (56%)
Frame = +1
Query: 37 PAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKVGPVPVLVMSV 216
P +A +TA ++RK T A M +FYT+D+PG+K+ P VL+MS+
Sbjct: 7 PQRGSAAATASMRRRKPTSGA---GGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMSI 63
Query: 217 LFIASVFLLHIWGK 258
FIA V +LH+ GK
Sbjct: 64 GFIAFVAVLHVMGK 77
>sp|O43002|SC61B_SCHPO Prpbable protein transport protein sec61 beta subunit
Length = 102
Score = 49.7 bits (117), Expect = 2e-06
Identities = 30/78 (38%), Positives = 39/78 (50%)
Frame = +1
Query: 16 AASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKVGPV 195
AAS P + A K K + S P + + YT+++ G KV PV
Sbjct: 14 AASAPGGPKSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLKLYTDEASGFKVDPV 73
Query: 196 PVLVMSVLFIASVFLLHI 249
V+V+SV FIASVFLLHI
Sbjct: 74 VVMVLSVGFIASVFLLHI 91
>sp|Q9HFC7|SC61B_YARLI Protein transport protein SEC61 beta subunit
Length = 91
Score = 41.2 bits (95), Expect = 8e-04
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +1
Query: 145 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGK 258
M + YT++S G+KV PV V+V+S+ FI SV LHI K
Sbjct: 47 MLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAK 84
>sp|Q5JDK7|SECG_PYRKO Preprotein translocase secG subunit (Protein transport protein
SEC61 beta subunit homolog)
Length = 56
Score = 37.4 bits (85), Expect = 0.011
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 145 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWG 255
+ RF+ ED+ +KV P V+ +++L IA F+LH++G
Sbjct: 15 LMRFFDEDTRAVKVSPKGVIALTLLLIAFEFILHMFG 51
>sp|Q8J2P4|SC61B_KLULA Protein transport protein SEC61 beta subunit
Length = 88
Score = 35.0 bits (79), Expect = 0.054
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +1
Query: 151 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGK 258
+ YT+++ G++V P+ VL ++V F+ SV LH+ K
Sbjct: 47 KLYTDEANGLRVDPLVVLFLAVAFVFSVVALHVVAK 82
>sp|P52871|SC6B2_YEAST Protein transport protein SEC61 beta 2 subunit
Length = 88
Score = 34.3 bits (77), Expect = 0.093
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 151 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYT 264
+ YT+++ G +V + VL +SV FI SV LH+ K+T
Sbjct: 48 KLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT 85
>sp|O94713|MEU27_SCHPO Meiotic expression up-regulated protein 27
Length = 736
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 291 IYYKKLRASGVFTPNMKQEY-RSNE*YTHNQDWNWTNFNS 175
I Y +++ SG F P+ QE +SN TH +WT+F S
Sbjct: 5 IAYPEIKISGAFRPDKIQEKGKSNRCDTHCSGSSWTSFKS 44
>sp|P50795|VL2_HPV21 Minor capsid protein L2
Length = 520
Score = 29.3 bits (64), Expect = 3.0
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 194 TGPTLIPGE-SSV*NLHIPAPELPPPGAVVLLGAD-PVAFLCLAPAVDP 54
TGP L+PGE ++ +H P P PPP V + A L +AP P
Sbjct: 124 TGPDLLPGEVETIAEIH-PGPTRPPPDTAVTTSTNGSSAVLEVAPEPTP 171
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,421,415
Number of Sequences: 369166
Number of extensions: 642755
Number of successful extensions: 2564
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2563
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)