Planarian EST Database


Dr_sW_024_A13

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_024_A13
         (303 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P60467|SC61B_CANFA  Protein transport protein Sec61 beta ...    94   1e-19
sp|Q9CQS8|SC61B_MOUSE  Protein transport protein Sec61 beta ...    93   2e-19
sp|P38389|SC61B_ARATH  Protein transport protein Sec61 beta ...    53   2e-07
sp|O43002|SC61B_SCHPO  Prpbable protein transport protein se...    50   2e-06
sp|Q9HFC7|SC61B_YARLI  Protein transport protein SEC61 beta ...    41   8e-04
sp|Q5JDK7|SECG_PYRKO  Preprotein translocase secG subunit (P...    37   0.011
sp|Q8J2P4|SC61B_KLULA  Protein transport protein SEC61 beta ...    35   0.054
sp|P52871|SC6B2_YEAST  Protein transport protein SEC61 beta ...    34   0.093
sp|O94713|MEU27_SCHPO  Meiotic expression up-regulated prote...    30   1.7  
sp|P50795|VL2_HPV21  Minor capsid protein L2                       29   3.0  
>sp|P60467|SC61B_CANFA Protein transport protein Sec61 beta subunit
 sp|P60468|SC61B_HUMAN Protein transport protein Sec61 beta subunit
          Length = 96

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 52/88 (59%), Positives = 56/88 (63%)
 Frame = +1

Query: 7   GGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKV 186
           G    S     A R AGST   +QRK   S   R            MWRFYTEDSPG+KV
Sbjct: 12  GSSGRSPSKAVAARAAGSTV--RQRK-NASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKV 68

Query: 187 GPVPVLVMSVLFIASVFLLHIWGKYTRS 270
           GPVPVLVMS+LFIASVF+LHIWGKYTRS
Sbjct: 69  GPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 beta subunit
          Length = 96

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 51/88 (57%), Positives = 56/88 (63%)
 Frame = +1

Query: 7   GGRAASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKV 186
           G    S     A R AGST   +QRK   S   R            MWRFYTEDSPG+KV
Sbjct: 12  GSSGRSPSKAVAARAAGSTV--RQRK-NASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKV 68

Query: 187 GPVPVLVMSVLFIASVFLLHIWGKYTRS 270
           GPVPVLVMS+LFIA+VF+LHIWGKYTRS
Sbjct: 69  GPVPVLVMSLLFIAAVFMLHIWGKYTRS 96
>sp|P38389|SC61B_ARATH Protein transport protein Sec61 beta subunit
          Length = 82

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 29/74 (39%), Positives = 42/74 (56%)
 Frame = +1

Query: 37  PAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKVGPVPVLVMSV 216
           P   +A +TA  ++RK T  A               M +FYT+D+PG+K+ P  VL+MS+
Sbjct: 7   PQRGSAAATASMRRRKPTSGA---GGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMSI 63

Query: 217 LFIASVFLLHIWGK 258
            FIA V +LH+ GK
Sbjct: 64  GFIAFVAVLHVMGK 77
>sp|O43002|SC61B_SCHPO Prpbable protein transport protein sec61 beta subunit
          Length = 102

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 30/78 (38%), Positives = 39/78 (50%)
 Frame = +1

Query: 16  AASNRATPAPRTAGSTAGAKQRKATGSAPKRXXXXXXXXXXXXMWRFYTEDSPGIKVGPV 195
           AAS    P  +     A  K  K + S P              + + YT+++ G KV PV
Sbjct: 14  AASAPGGPKSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLKLYTDEASGFKVDPV 73

Query: 196 PVLVMSVLFIASVFLLHI 249
            V+V+SV FIASVFLLHI
Sbjct: 74  VVMVLSVGFIASVFLLHI 91
>sp|Q9HFC7|SC61B_YARLI Protein transport protein SEC61 beta subunit
          Length = 91

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 20/38 (52%), Positives = 27/38 (71%)
 Frame = +1

Query: 145 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGK 258
           M + YT++S G+KV PV V+V+S+ FI SV  LHI  K
Sbjct: 47  MLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAK 84
>sp|Q5JDK7|SECG_PYRKO Preprotein translocase secG subunit (Protein transport protein
           SEC61 beta subunit homolog)
          Length = 56

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +1

Query: 145 MWRFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWG 255
           + RF+ ED+  +KV P  V+ +++L IA  F+LH++G
Sbjct: 15  LMRFFDEDTRAVKVSPKGVIALTLLLIAFEFILHMFG 51
>sp|Q8J2P4|SC61B_KLULA Protein transport protein SEC61 beta subunit
          Length = 88

 Score = 35.0 bits (79), Expect = 0.054
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +1

Query: 151 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGK 258
           + YT+++ G++V P+ VL ++V F+ SV  LH+  K
Sbjct: 47  KLYTDEANGLRVDPLVVLFLAVAFVFSVVALHVVAK 82
>sp|P52871|SC6B2_YEAST Protein transport protein SEC61 beta 2 subunit
          Length = 88

 Score = 34.3 bits (77), Expect = 0.093
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +1

Query: 151 RFYTEDSPGIKVGPVPVLVMSVLFIASVFLLHIWGKYT 264
           + YT+++ G +V  + VL +SV FI SV  LH+  K+T
Sbjct: 48  KLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT 85
>sp|O94713|MEU27_SCHPO Meiotic expression up-regulated protein 27
          Length = 736

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 291 IYYKKLRASGVFTPNMKQEY-RSNE*YTHNQDWNWTNFNS 175
           I Y +++ SG F P+  QE  +SN   TH    +WT+F S
Sbjct: 5   IAYPEIKISGAFRPDKIQEKGKSNRCDTHCSGSSWTSFKS 44
>sp|P50795|VL2_HPV21 Minor capsid protein L2
          Length = 520

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 194 TGPTLIPGE-SSV*NLHIPAPELPPPGAVVLLGAD-PVAFLCLAPAVDP 54
           TGP L+PGE  ++  +H P P  PPP   V    +   A L +AP   P
Sbjct: 124 TGPDLLPGEVETIAEIH-PGPTRPPPDTAVTTSTNGSSAVLEVAPEPTP 171
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,421,415
Number of Sequences: 369166
Number of extensions: 642755
Number of successful extensions: 2564
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2563
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)