Planarian EST Database

DrC_00384

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00384 GAATTCGGCACGAGGAGAATTTGAAATTTTGGAAGTTGTAACTAAAACAATAATTTTAGT AATAAAATGTCAGGAAAAGATCGCATAAACATTTTCCCATCTAGAATGGCTCAAACAGCC ATGAAGTTGCGTTTAAAAGGAGCGCAAAAAGGTCACAGTCTTTTGAAAAAGAAATCTGAT GCTCTTACAATGAAATTTAGACAAATTCTTAAAAAAATTATAGATATAAAACAAGATATG GGTGGAGTTATGAAAGATTCAAATTTTTCTTTAGCTGAAGTTAAATTTGCCCATAGTGGT AACATAAATCAGATGGTTTTACAAAATGTAACAAAATCCCAAATTAAAGTTCGTTCAGCT AAAGAAAATGTTGCTGGTGTTGTTTTACCAGTTTTTGAAGTTATTAATGAAGGAGGAAGC AGCTATGAATTAACTGGACTTTCTGGTGGTGGACAACAAATCGATCGATTGAAAAAGAAT TATGCCAAAGCTTTAGATCTCTTAGTAAATTTAGCTTCTCTGCAAACTTCATTTGTAACA TTAGACGAAGTGATAAAGGCCACCAATCGACGAGTTAATGCGATAGAACATGTTATAATT CCGAAAATCGAAAGGACAGTTCAATACATCATTCAGGAACTCGACGAAAGAGAACGAGAA GAATTCTATCGATTGAAAAAGATTCAGGAAAAGAAAAAGAAGATCAAAGCAGCGCTTGAA GAAGAAAGATTGGCTGCCGGATTGGACGCCATCGATATTGCCGCATCGGGGGCCCGCACG ATCAAGGAATTGGCGGATGACGAGGACGACAACCTGTTTCGTTGATGCGCTCCTTTGTTG GCGTAATAATTTCTCCCAGCATAATATACTTTTCAATTAGTAAATATTTGTCTGAC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00384
         (896 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y5K8|VATD_HUMAN  Vacuolar ATP synthase subunit D (V-ATP...   263   5e-70
sp|P57746|VATD_MOUSE  Vacuolar ATP synthase subunit D (V-ATP...   263   5e-70
sp|O97755|VATD_RABIT  Vacuolar ATP synthase subunit D (V-ATP...   261   1e-69
sp|P39942|VATD_BOVIN  Vacuolar ATP synthase subunit D (V-ATP...   261   2e-69
sp|Q9V7D2|VATD1_DROME  Vacuolar ATP synthase subunit D 1 (V-...   261   2e-69
sp|Q9NEF6|VATD2_DROME  Probable vacuolar ATP synthase subuni...   255   1e-67
sp|P57747|VATD_SUBDO  Vacuolar ATP synthase subunit D (V-ATP...   255   1e-67
sp|Q9U0S4|VATD_MANSE  Vacuolar ATP synthase subunit D (V-ATP...   254   2e-67
sp|P34462|VATD_CAEEL  Probable vacuolar ATP synthase subunit...   243   5e-64
sp|P87220|VATD_CANAL  Vacuolar ATP synthase subunit D (V-ATP...   201   2e-51

>sp|Q9Y5K8|VATD_HUMAN Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
           proton pump D subunit) (V-ATPase 28 kDa accessory
           protein)
          Length = 247

 Score =  263 bits (672), Expect = 5e-70
 Identities = 137/201 (68%), Positives = 162/201 (80%)
 Frame = +1

Query: 67  MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
           MSGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR            MG 
Sbjct: 1   MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
           VM+++ FSLAE KF  +G+ +  V+QNV K+Q+K+R+ K+NVAGV LPVFE  +EG  SY
Sbjct: 61  VMREAAFSLAEAKFT-AGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
           ELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVNAIEHVIIP+
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query: 607 IERTVQYIIQELDEREREEFY 669
           IERT+ YII ELDEREREEFY
Sbjct: 180 IERTLAYIITELDEREREEFY 200

>sp|P57746|VATD_MOUSE Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
           proton pump D subunit) (V-ATPase 28 kDa accessory
           protein)
          Length = 247

 Score =  263 bits (672), Expect = 5e-70
 Identities = 137/201 (68%), Positives = 162/201 (80%)
 Frame = +1

Query: 67  MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
           MSGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR            MG 
Sbjct: 1   MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
           VM+++ FSLAE KF  +G+ +  V+QNV K+Q+K+R+ K+NVAGV LPVFE  +EG  SY
Sbjct: 61  VMREAAFSLAEAKFT-AGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
           ELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVNAIEHVIIP+
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query: 607 IERTVQYIIQELDEREREEFY 669
           IERT+ YII ELDEREREEFY
Sbjct: 180 IERTLAYIITELDEREREEFY 200

>sp|O97755|VATD_RABIT Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
           proton pump D subunit) (V-ATPase 28 kDa accessory
           protein)
          Length = 247

 Score =  261 bits (668), Expect = 1e-69
 Identities = 136/201 (67%), Positives = 161/201 (80%)
 Frame = +1

Query: 67  MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
           MSGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR            MG 
Sbjct: 1   MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
           VM+++ FSLAE KF  +G+ +   +QNV K+Q+K+R+ K+NVAGV LPVFE  +EG  SY
Sbjct: 61  VMREAAFSLAEAKFT-AGDFSTTAIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
           ELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVNAIEHVIIP+
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179

Query: 607 IERTVQYIIQELDEREREEFY 669
           IERT+ YII ELDEREREEFY
Sbjct: 180 IERTLAYIITELDEREREEFY 200

>sp|P39942|VATD_BOVIN Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
           proton pump D subunit) (V-ATPase 28 kDa accessory
           protein)
          Length = 247

 Score =  261 bits (667), Expect = 2e-69
 Identities = 136/201 (67%), Positives = 161/201 (80%)
 Frame = +1

Query: 67  MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
           MSGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR            MG 
Sbjct: 1   MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60

Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
           VM+++ FSLAE KF  +G+ +  V+QNV K+Q+K+R+ K+NVAGV LPVFE  +EG  SY
Sbjct: 61  VMREAAFSLAEAKFT-AGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119

Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
           ELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVN IEHVIIP+
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNRIEHVIIPR 179

Query: 607 IERTVQYIIQELDEREREEFY 669
           IERT+ YII ELDEREREEFY
Sbjct: 180 IERTLAYIITELDEREREEFY 200

>sp|Q9V7D2|VATD1_DROME Vacuolar ATP synthase subunit D 1 (V-ATPase D subunit 1) (Vacuolar
           proton pump D subunit 1) (dV-ATPase D)
          Length = 246

 Score =  261 bits (666), Expect = 2e-69
 Identities = 138/201 (68%), Positives = 158/201 (78%)
 Frame = +1

Query: 67  MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
           MSGKDR+ IFPSR AQ  MK RL GAQKGH LLKKK+DAL M+FR            MG 
Sbjct: 1   MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGKIIETKTLMGD 60

Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
           VMK++ FSLAE KF  SG+INQ+VLQNVTK+QIK+R+ K+NVAGV LPVFE   +G  +Y
Sbjct: 61  VMKEAAFSLAEAKFT-SGDINQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGSDTY 119

Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
           EL GL+ GGQQ+ +LKKNY  A+ LLV LASLQTSFVTLDEVIK TNRRVNAIEHVIIP+
Sbjct: 120 ELAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR 179

Query: 607 IERTVQYIIQELDEREREEFY 669
           I+RT+ YII ELDE EREEFY
Sbjct: 180 IDRTLAYIISELDELEREEFY 200

>sp|Q9NEF6|VATD2_DROME Probable vacuolar ATP synthase subunit D 2 (V-ATPase D subunit 2)
           (Vacuolar proton pump D subunit 2)
          Length = 249

 Score =  255 bits (652), Expect = 1e-67
 Identities = 134/201 (66%), Positives = 158/201 (78%)
 Frame = +1

Query: 67  MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
           M+ KDR+ IFPSR AQT MK RL GA KGH LLKKK+DAL M+FR            MG 
Sbjct: 1   MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQ 60

Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
           VMK++ FSLAEVKF  +G+INQ+VLQNVTK+QIK+R+ K+NVAGV LP+FE   +G  +Y
Sbjct: 61  VMKEAAFSLAEVKFT-TGDINQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTY 119

Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
           EL GL+ GGQQ+ +LKKNY  A+ LLV LASLQTSFVTLD+VIK TNRRVNAIEHVIIP+
Sbjct: 120 ELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPR 179

Query: 607 IERTVQYIIQELDEREREEFY 669
           I RT++YII ELDE EREEFY
Sbjct: 180 INRTIEYIISELDELEREEFY 200

>sp|P57747|VATD_SUBDO Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
           proton pump D subunit)
          Length = 250

 Score =  255 bits (652), Expect = 1e-67
 Identities = 132/201 (65%), Positives = 160/201 (79%)
 Frame = +1

Query: 67  MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
           MSGKDRIN+FPSRMA T MK RLKGAQKGHSLLK+K+DALT++FR            MG 
Sbjct: 1   MSGKDRINVFPSRMALTLMKARLKGAQKGHSLLKRKADALTLRFRQILGKIIETKTLMGE 60

Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
           VMK++ FSLAE KF  +G+ ++MVLQNV K++I++ + K+NVAGV LPVFE  ++G  +Y
Sbjct: 61  VMKEATFSLAEAKFV-AGDFSEMVLQNVDKAKIRLHTKKDNVAGVTLPVFETYSDGSDTY 119

Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
           ELTGLS GGQ + + K+ + KA+ LLV LASLQT+FVTLDEVIK TNRRVNAIEHVIIPK
Sbjct: 120 ELTGLSRGGQLVSKCKEVFGKAVRLLVELASLQTAFVTLDEVIKVTNRRVNAIEHVIIPK 179

Query: 607 IERTVQYIIQELDEREREEFY 669
           I+RT+ YI  ELDEREREEFY
Sbjct: 180 IQRTLSYISIELDEREREEFY 200

>sp|Q9U0S4|VATD_MANSE Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
           proton pump D subunit)
          Length = 246

 Score =  254 bits (650), Expect = 2e-67
 Identities = 134/201 (66%), Positives = 157/201 (78%)
 Frame = +1

Query: 67  MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
           MSGKDR+ IFPSR AQ  MK RL GAQKGH LLKKK+DAL ++FR            MG 
Sbjct: 1   MSGKDRLAIFPSRGAQMLMKGRLAGAQKGHGLLKKKADALQVRFRLILSKIIETKTLMGE 60

Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
           VMK++ FSLAE KF  +G+ NQ+VLQNVTK+QIK+RS K+NVAGV LP+FE   +G  +Y
Sbjct: 61  VMKEAAFSLAEAKFT-TGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTY 119

Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
           EL GL+ GGQQ+ +LKKN+  A+ LLV LASLQTSFVTLDEVIK TNRRVNAIEHVIIP+
Sbjct: 120 ELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR 179

Query: 607 IERTVQYIIQELDEREREEFY 669
           +ERT+ YII ELDE EREEFY
Sbjct: 180 LERTLAYIISELDELEREEFY 200

>sp|P34462|VATD_CAEEL Probable vacuolar ATP synthase subunit D (V-ATPase D subunit)
           (Vacuolar proton pump D subunit)
          Length = 257

 Score =  243 bits (620), Expect = 5e-64
 Identities = 125/199 (62%), Positives = 151/199 (75%)
 Frame = +1

Query: 73  GKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGVM 252
           GKDRI +FPSRMAQT MK RLKGAQKGHSLLKKK+DAL ++FR            MG VM
Sbjct: 5   GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64

Query: 253 KDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYEL 432
           K++ FSLAE KF  +G+ +  V+QNV+++Q +VR  KENV GV LPVF+   +G  +Y+L
Sbjct: 65  KEAAFSLAEAKFT-AGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDL 123

Query: 433 TGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKIE 612
           TGL  GG  I RLKKNY KA++LLV LA+LQT F+TLDE IK TNRRVNAIEHVIIP+IE
Sbjct: 124 TGLGKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIE 183

Query: 613 RTVQYIIQELDEREREEFY 669
            T+ YI+ ELDE EREEF+
Sbjct: 184 NTLTYIVTELDEMEREEFF 202

>sp|P87220|VATD_CANAL Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
           proton pump D subunit)
          Length = 267

 Score =  201 bits (512), Expect = 2e-51
 Identities = 109/203 (53%), Positives = 145/203 (71%), Gaps = 2/203 (0%)
 Frame = +1

Query: 67  MSGK-DRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMG 243
           MSG  +R  +FP+RM    MK +LKGAQ+GHSLLK+KS+ALT +FR            MG
Sbjct: 1   MSGAGNREQVFPTRMTLGVMKSKLKGAQQGHSLLKRKSEALTKRFRDITQRIDDAKRKMG 60

Query: 244 GVMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEV-INEGGS 420
            VM+ + FSLAEV++A   NI+  V ++V K++  V++ +ENV+GV LP F+  INE  +
Sbjct: 61  RVMQTAAFSLAEVQYATGDNISYQVQESVQKARFTVKAKQENVSGVFLPTFDSHINEDVN 120

Query: 421 SYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVII 600
            ++LT L+ GGQQ+ + K  Y+KA++ LV LASLQT+F+ LDEVIK TNRRVNAIEHVII
Sbjct: 121 DFKLTALARGGQQVQKAKLIYSKAVETLVELASLQTAFIILDEVIKITNRRVNAIEHVII 180

Query: 601 PKIERTVQYIIQELDEREREEFY 669
           P+ E T+ YI  ELDE +REEFY
Sbjct: 181 PRTENTIAYINGELDEMDREEFY 203

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,316,147
Number of Sequences: 369166
Number of extensions: 1391806
Number of successful extensions: 3989
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3953
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00384

Planaria EST Database

DrC_00384

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail