Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_N03
(826 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y5K8|VATD_HUMAN Vacuolar ATP synthase subunit D (V-ATP... 261 2e-69
sp|P57746|VATD_MOUSE Vacuolar ATP synthase subunit D (V-ATP... 261 2e-69
sp|O97755|VATD_RABIT Vacuolar ATP synthase subunit D (V-ATP... 259 5e-69
sp|P39942|VATD_BOVIN Vacuolar ATP synthase subunit D (V-ATP... 259 6e-69
sp|Q9V7D2|VATD1_DROME Vacuolar ATP synthase subunit D 1 (V-... 259 8e-69
sp|Q9NEF6|VATD2_DROME Probable vacuolar ATP synthase subuni... 253 3e-67
sp|P57747|VATD_SUBDO Vacuolar ATP synthase subunit D (V-ATP... 253 3e-67
sp|Q9U0S4|VATD_MANSE Vacuolar ATP synthase subunit D (V-ATP... 253 6e-67
sp|P34462|VATD_CAEEL Probable vacuolar ATP synthase subunit... 243 5e-64
sp|P87220|VATD_CANAL Vacuolar ATP synthase subunit D (V-ATP... 201 3e-51
>sp|Q9Y5K8|VATD_HUMAN Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 261 bits (667), Expect = 2e-69
Identities = 136/200 (68%), Positives = 161/200 (80%)
Frame = +1
Query: 1 SGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGV 180
SGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR MG V
Sbjct: 2 SGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEV 61
Query: 181 MKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYE 360
M+++ FSLAE KF +G+ + V+QNV K+Q+K+R+ K+NVAGV LPVFE +EG SYE
Sbjct: 62 MREAAFSLAEAKFT-AGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 120
Query: 361 LTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKI 540
LTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVNAIEHVIIP+I
Sbjct: 121 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 180
Query: 541 ERTVQYIIQELDEREREEFY 600
ERT+ YII ELDEREREEFY
Sbjct: 181 ERTLAYIITELDEREREEFY 200
>sp|P57746|VATD_MOUSE Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 261 bits (667), Expect = 2e-69
Identities = 136/200 (68%), Positives = 161/200 (80%)
Frame = +1
Query: 1 SGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGV 180
SGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR MG V
Sbjct: 2 SGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEV 61
Query: 181 MKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYE 360
M+++ FSLAE KF +G+ + V+QNV K+Q+K+R+ K+NVAGV LPVFE +EG SYE
Sbjct: 62 MREAAFSLAEAKFT-AGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 120
Query: 361 LTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKI 540
LTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVNAIEHVIIP+I
Sbjct: 121 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 180
Query: 541 ERTVQYIIQELDEREREEFY 600
ERT+ YII ELDEREREEFY
Sbjct: 181 ERTLAYIITELDEREREEFY 200
>sp|O97755|VATD_RABIT Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 259 bits (663), Expect = 5e-69
Identities = 135/200 (67%), Positives = 160/200 (80%)
Frame = +1
Query: 1 SGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGV 180
SGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR MG V
Sbjct: 2 SGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEV 61
Query: 181 MKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYE 360
M+++ FSLAE KF +G+ + +QNV K+Q+K+R+ K+NVAGV LPVFE +EG SYE
Sbjct: 62 MREAAFSLAEAKFT-AGDFSTTAIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 120
Query: 361 LTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKI 540
LTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVNAIEHVIIP+I
Sbjct: 121 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 180
Query: 541 ERTVQYIIQELDEREREEFY 600
ERT+ YII ELDEREREEFY
Sbjct: 181 ERTLAYIITELDEREREEFY 200
>sp|P39942|VATD_BOVIN Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 259 bits (662), Expect = 6e-69
Identities = 135/200 (67%), Positives = 160/200 (80%)
Frame = +1
Query: 1 SGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGV 180
SGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR MG V
Sbjct: 2 SGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEV 61
Query: 181 MKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYE 360
M+++ FSLAE KF +G+ + V+QNV K+Q+K+R+ K+NVAGV LPVFE +EG SYE
Sbjct: 62 MREAAFSLAEAKFT-AGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 120
Query: 361 LTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKI 540
LTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVN IEHVIIP+I
Sbjct: 121 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNRIEHVIIPRI 180
Query: 541 ERTVQYIIQELDEREREEFY 600
ERT+ YII ELDEREREEFY
Sbjct: 181 ERTLAYIITELDEREREEFY 200
>sp|Q9V7D2|VATD1_DROME Vacuolar ATP synthase subunit D 1 (V-ATPase D subunit 1) (Vacuolar
proton pump D subunit 1) (dV-ATPase D)
Length = 246
Score = 259 bits (661), Expect = 8e-69
Identities = 137/200 (68%), Positives = 157/200 (78%)
Frame = +1
Query: 1 SGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGV 180
SGKDR+ IFPSR AQ MK RL GAQKGH LLKKK+DAL M+FR MG V
Sbjct: 2 SGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGKIIETKTLMGDV 61
Query: 181 MKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYE 360
MK++ FSLAE KF SG+INQ+VLQNVTK+QIK+R+ K+NVAGV LPVFE +G +YE
Sbjct: 62 MKEAAFSLAEAKFT-SGDINQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGSDTYE 120
Query: 361 LTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKI 540
L GL+ GGQQ+ +LKKNY A+ LLV LASLQTSFVTLDEVIK TNRRVNAIEHVIIP+I
Sbjct: 121 LAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRI 180
Query: 541 ERTVQYIIQELDEREREEFY 600
+RT+ YII ELDE EREEFY
Sbjct: 181 DRTLAYIISELDELEREEFY 200
>sp|Q9NEF6|VATD2_DROME Probable vacuolar ATP synthase subunit D 2 (V-ATPase D subunit 2)
(Vacuolar proton pump D subunit 2)
Length = 249
Score = 253 bits (647), Expect = 3e-67
Identities = 133/200 (66%), Positives = 157/200 (78%)
Frame = +1
Query: 1 SGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGV 180
+ KDR+ IFPSR AQT MK RL GA KGH LLKKK+DAL M+FR MG V
Sbjct: 2 AAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQV 61
Query: 181 MKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYE 360
MK++ FSLAEVKF +G+INQ+VLQNVTK+QIK+R+ K+NVAGV LP+FE +G +YE
Sbjct: 62 MKEAAFSLAEVKFT-TGDINQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTYE 120
Query: 361 LTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKI 540
L GL+ GGQQ+ +LKKNY A+ LLV LASLQTSFVTLD+VIK TNRRVNAIEHVIIP+I
Sbjct: 121 LAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPRI 180
Query: 541 ERTVQYIIQELDEREREEFY 600
RT++YII ELDE EREEFY
Sbjct: 181 NRTIEYIISELDELEREEFY 200
>sp|P57747|VATD_SUBDO Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 250
Score = 253 bits (647), Expect = 3e-67
Identities = 131/200 (65%), Positives = 159/200 (79%)
Frame = +1
Query: 1 SGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGV 180
SGKDRIN+FPSRMA T MK RLKGAQKGHSLLK+K+DALT++FR MG V
Sbjct: 2 SGKDRINVFPSRMALTLMKARLKGAQKGHSLLKRKADALTLRFRQILGKIIETKTLMGEV 61
Query: 181 MKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYE 360
MK++ FSLAE KF +G+ ++MVLQNV K++I++ + K+NVAGV LPVFE ++G +YE
Sbjct: 62 MKEATFSLAEAKFV-AGDFSEMVLQNVDKAKIRLHTKKDNVAGVTLPVFETYSDGSDTYE 120
Query: 361 LTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKI 540
LTGLS GGQ + + K+ + KA+ LLV LASLQT+FVTLDEVIK TNRRVNAIEHVIIPKI
Sbjct: 121 LTGLSRGGQLVSKCKEVFGKAVRLLVELASLQTAFVTLDEVIKVTNRRVNAIEHVIIPKI 180
Query: 541 ERTVQYIIQELDEREREEFY 600
+RT+ YI ELDEREREEFY
Sbjct: 181 QRTLSYISIELDEREREEFY 200
>sp|Q9U0S4|VATD_MANSE Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 246
Score = 253 bits (645), Expect = 6e-67
Identities = 133/200 (66%), Positives = 156/200 (78%)
Frame = +1
Query: 1 SGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGV 180
SGKDR+ IFPSR AQ MK RL GAQKGH LLKKK+DAL ++FR MG V
Sbjct: 2 SGKDRLAIFPSRGAQMLMKGRLAGAQKGHGLLKKKADALQVRFRLILSKIIETKTLMGEV 61
Query: 181 MKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYE 360
MK++ FSLAE KF +G+ NQ+VLQNVTK+QIK+RS K+NVAGV LP+FE +G +YE
Sbjct: 62 MKEAAFSLAEAKFT-TGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYE 120
Query: 361 LTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKI 540
L GL+ GGQQ+ +LKKN+ A+ LLV LASLQTSFVTLDEVIK TNRRVNAIEHVIIP++
Sbjct: 121 LAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRL 180
Query: 541 ERTVQYIIQELDEREREEFY 600
ERT+ YII ELDE EREEFY
Sbjct: 181 ERTLAYIISELDELEREEFY 200
>sp|P34462|VATD_CAEEL Probable vacuolar ATP synthase subunit D (V-ATPase D subunit)
(Vacuolar proton pump D subunit)
Length = 257
Score = 243 bits (620), Expect = 5e-64
Identities = 125/199 (62%), Positives = 151/199 (75%)
Frame = +1
Query: 4 GKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGVM 183
GKDRI +FPSRMAQT MK RLKGAQKGHSLLKKK+DAL ++FR MG VM
Sbjct: 5 GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64
Query: 184 KDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYEL 363
K++ FSLAE KF +G+ + V+QNV+++Q +VR KENV GV LPVF+ +G +Y+L
Sbjct: 65 KEAAFSLAEAKFT-AGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDL 123
Query: 364 TGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKIE 543
TGL GG I RLKKNY KA++LLV LA+LQT F+TLDE IK TNRRVNAIEHVIIP+IE
Sbjct: 124 TGLGKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIE 183
Query: 544 RTVQYIIQELDEREREEFY 600
T+ YI+ ELDE EREEF+
Sbjct: 184 NTLTYIVTELDEMEREEFF 202
>sp|P87220|VATD_CANAL Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 267
Score = 201 bits (510), Expect = 3e-51
Identities = 106/198 (53%), Positives = 142/198 (71%), Gaps = 1/198 (0%)
Frame = +1
Query: 10 DRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGVMKD 189
+R +FP+RM MK +LKGAQ+GHSLLK+KS+ALT +FR MG VM+
Sbjct: 6 NREQVFPTRMTLGVMKSKLKGAQQGHSLLKRKSEALTKRFRDITQRIDDAKRKMGRVMQT 65
Query: 190 SNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEV-INEGGSSYELT 366
+ FSLAEV++A NI+ V ++V K++ V++ +ENV+GV LP F+ INE + ++LT
Sbjct: 66 AAFSLAEVQYATGDNISYQVQESVQKARFTVKAKQENVSGVFLPTFDSHINEDVNDFKLT 125
Query: 367 GLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKIER 546
L+ GGQQ+ + K Y+KA++ LV LASLQT+F+ LDEVIK TNRRVNAIEHVIIP+ E
Sbjct: 126 ALARGGQQVQKAKLIYSKAVETLVELASLQTAFIILDEVIKITNRRVNAIEHVIIPRTEN 185
Query: 547 TVQYIIQELDEREREEFY 600
T+ YI ELDE +REEFY
Sbjct: 186 TIAYINGELDEMDREEFY 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,761,925
Number of Sequences: 369166
Number of extensions: 1320396
Number of successful extensions: 4018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3983
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)