Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_A20
(517 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y5K8|VATD_HUMAN Vacuolar ATP synthase subunit D (V-ATP... 149 5e-36
sp|P57746|VATD_MOUSE Vacuolar ATP synthase subunit D (V-ATP... 149 5e-36
sp|O97755|VATD_RABIT Vacuolar ATP synthase subunit D (V-ATP... 149 5e-36
sp|P39942|VATD_BOVIN Vacuolar ATP synthase subunit D (V-ATP... 147 2e-35
sp|Q9V7D2|VATD1_DROME Vacuolar ATP synthase subunit D 1 (V-... 140 1e-33
sp|Q9NEF6|VATD2_DROME Probable vacuolar ATP synthase subuni... 139 4e-33
sp|Q9U0S4|VATD_MANSE Vacuolar ATP synthase subunit D (V-ATP... 139 4e-33
sp|P57747|VATD_SUBDO Vacuolar ATP synthase subunit D (V-ATP... 137 2e-32
sp|P34462|VATD_CAEEL Probable vacuolar ATP synthase subunit... 133 3e-31
sp|O59941|VATD_NEUCR Vacuolar ATP synthase subunit D (V-ATP... 120 1e-27
>sp|Q9Y5K8|VATD_HUMAN Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 149 bits (375), Expect = 5e-36
Identities = 75/97 (77%), Positives = 85/97 (87%)
Frame = +2
Query: 2 VVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIK 181
V LPVFE +EG SYELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK
Sbjct: 104 VTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIK 163
Query: 182 ATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 292
TNRRVNAIEHVIIP+IERT+ YII ELDEREREEFY
Sbjct: 164 ITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFY 200
>sp|P57746|VATD_MOUSE Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 149 bits (375), Expect = 5e-36
Identities = 75/97 (77%), Positives = 85/97 (87%)
Frame = +2
Query: 2 VVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIK 181
V LPVFE +EG SYELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK
Sbjct: 104 VTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIK 163
Query: 182 ATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 292
TNRRVNAIEHVIIP+IERT+ YII ELDEREREEFY
Sbjct: 164 ITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFY 200
>sp|O97755|VATD_RABIT Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 149 bits (375), Expect = 5e-36
Identities = 75/97 (77%), Positives = 85/97 (87%)
Frame = +2
Query: 2 VVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIK 181
V LPVFE +EG SYELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK
Sbjct: 104 VTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIK 163
Query: 182 ATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 292
TNRRVNAIEHVIIP+IERT+ YII ELDEREREEFY
Sbjct: 164 ITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFY 200
>sp|P39942|VATD_BOVIN Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 147 bits (370), Expect = 2e-35
Identities = 74/97 (76%), Positives = 84/97 (86%)
Frame = +2
Query: 2 VVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIK 181
V LPVFE +EG SYELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK
Sbjct: 104 VTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIK 163
Query: 182 ATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 292
TNRRVN IEHVIIP+IERT+ YII ELDEREREEFY
Sbjct: 164 ITNRRVNRIEHVIIPRIERTLAYIITELDEREREEFY 200
>sp|Q9V7D2|VATD1_DROME Vacuolar ATP synthase subunit D 1 (V-ATPase D subunit 1) (Vacuolar
proton pump D subunit 1) (dV-ATPase D)
Length = 246
Score = 140 bits (354), Expect = 1e-33
Identities = 71/97 (73%), Positives = 80/97 (82%)
Frame = +2
Query: 2 VVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIK 181
V LPVFE +G +YEL GL+ GGQQ+ +LKKNY A+ LLV LASLQTSFVTLDEVIK
Sbjct: 104 VTLPVFESYQDGSDTYELAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVTLDEVIK 163
Query: 182 ATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 292
TNRRVNAIEHVIIP+I+RT+ YII ELDE EREEFY
Sbjct: 164 ITNRRVNAIEHVIIPRIDRTLAYIISELDELEREEFY 200
>sp|Q9NEF6|VATD2_DROME Probable vacuolar ATP synthase subunit D 2 (V-ATPase D subunit 2)
(Vacuolar proton pump D subunit 2)
Length = 249
Score = 139 bits (350), Expect = 4e-33
Identities = 69/97 (71%), Positives = 80/97 (82%)
Frame = +2
Query: 2 VVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIK 181
V LP+FE +G +YEL GL+ GGQQ+ +LKKNY A+ LLV LASLQTSFVTLD+VIK
Sbjct: 104 VTLPIFEPYTDGVDTYELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIK 163
Query: 182 ATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 292
TNRRVNAIEHVIIP+I RT++YII ELDE EREEFY
Sbjct: 164 VTNRRVNAIEHVIIPRINRTIEYIISELDELEREEFY 200
>sp|Q9U0S4|VATD_MANSE Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 246
Score = 139 bits (350), Expect = 4e-33
Identities = 69/97 (71%), Positives = 80/97 (82%)
Frame = +2
Query: 2 VVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIK 181
V LP+FE +G +YEL GL+ GGQQ+ +LKKN+ A+ LLV LASLQTSFVTLDEVIK
Sbjct: 104 VTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIK 163
Query: 182 ATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 292
TNRRVNAIEHVIIP++ERT+ YII ELDE EREEFY
Sbjct: 164 ITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFY 200
>sp|P57747|VATD_SUBDO Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 250
Score = 137 bits (344), Expect = 2e-32
Identities = 69/97 (71%), Positives = 80/97 (82%)
Frame = +2
Query: 2 VVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIK 181
V LPVFE ++G +YELTGLS GGQ + + K+ + KA+ LLV LASLQT+FVTLDEVIK
Sbjct: 104 VTLPVFETYSDGSDTYELTGLSRGGQLVSKCKEVFGKAVRLLVELASLQTAFVTLDEVIK 163
Query: 182 ATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 292
TNRRVNAIEHVIIPKI+RT+ YI ELDEREREEFY
Sbjct: 164 VTNRRVNAIEHVIIPKIQRTLSYISIELDEREREEFY 200
>sp|P34462|VATD_CAEEL Probable vacuolar ATP synthase subunit D (V-ATPase D subunit)
(Vacuolar proton pump D subunit)
Length = 257
Score = 133 bits (334), Expect = 3e-31
Identities = 65/97 (67%), Positives = 77/97 (79%)
Frame = +2
Query: 2 VVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIK 181
V LPVF+ +G +Y+LTGL GG I RLKKNY KA++LLV LA+LQT F+TLDE IK
Sbjct: 106 VFLPVFDAYQDGPDAYDLTGLGKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIK 165
Query: 182 ATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 292
TNRRVNAIEHVIIP+IE T+ YI+ ELDE EREEF+
Sbjct: 166 VTNRRVNAIEHVIIPRIENTLTYIVTELDEMEREEFF 202
>sp|O59941|VATD_NEUCR Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 264
Score = 120 bits (302), Expect = 1e-27
Identities = 60/98 (61%), Positives = 74/98 (75%), Gaps = 1/98 (1%)
Frame = +2
Query: 2 VVLPVFEVIN-EGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVI 178
V+LP FE EG + +TGL GGQQ+ R ++ YA+A++ LV LASLQT+FV LDEVI
Sbjct: 106 VLLPAFEAYQAEGNDDFAMTGLGKGGQQVQRCRETYARAVEALVELASLQTAFVILDEVI 165
Query: 179 KATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 292
K NRRVNAIEHVIIP+ E T++YI ELDE +REEFY
Sbjct: 166 KVVNRRVNAIEHVIIPRTENTIKYINSELDELDREEFY 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,121,363
Number of Sequences: 369166
Number of extensions: 850364
Number of successful extensions: 2825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2824
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)