Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_F18
(891 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y5K8|VATD_HUMAN Vacuolar ATP synthase subunit D (V-ATP... 263 5e-70
sp|P57746|VATD_MOUSE Vacuolar ATP synthase subunit D (V-ATP... 263 5e-70
sp|O97755|VATD_RABIT Vacuolar ATP synthase subunit D (V-ATP... 261 1e-69
sp|P39942|VATD_BOVIN Vacuolar ATP synthase subunit D (V-ATP... 261 2e-69
sp|Q9V7D2|VATD1_DROME Vacuolar ATP synthase subunit D 1 (V-... 261 2e-69
sp|Q9NEF6|VATD2_DROME Probable vacuolar ATP synthase subuni... 255 1e-67
sp|P57747|VATD_SUBDO Vacuolar ATP synthase subunit D (V-ATP... 255 1e-67
sp|Q9U0S4|VATD_MANSE Vacuolar ATP synthase subunit D (V-ATP... 254 2e-67
sp|P34462|VATD_CAEEL Probable vacuolar ATP synthase subunit... 243 5e-64
sp|P87220|VATD_CANAL Vacuolar ATP synthase subunit D (V-ATP... 201 2e-51
>sp|Q9Y5K8|VATD_HUMAN Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 263 bits (672), Expect = 5e-70
Identities = 137/201 (68%), Positives = 162/201 (80%)
Frame = +1
Query: 67 MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
MSGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR MG
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
VM+++ FSLAE KF +G+ + V+QNV K+Q+K+R+ K+NVAGV LPVFE +EG SY
Sbjct: 61 VMREAAFSLAEAKFT-AGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119
Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
ELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVNAIEHVIIP+
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179
Query: 607 IERTVQYIIQELDEREREEFY 669
IERT+ YII ELDEREREEFY
Sbjct: 180 IERTLAYIITELDEREREEFY 200
>sp|P57746|VATD_MOUSE Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 263 bits (672), Expect = 5e-70
Identities = 137/201 (68%), Positives = 162/201 (80%)
Frame = +1
Query: 67 MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
MSGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR MG
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
VM+++ FSLAE KF +G+ + V+QNV K+Q+K+R+ K+NVAGV LPVFE +EG SY
Sbjct: 61 VMREAAFSLAEAKFT-AGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119
Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
ELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVNAIEHVIIP+
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179
Query: 607 IERTVQYIIQELDEREREEFY 669
IERT+ YII ELDEREREEFY
Sbjct: 180 IERTLAYIITELDEREREEFY 200
>sp|O97755|VATD_RABIT Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 261 bits (668), Expect = 1e-69
Identities = 136/201 (67%), Positives = 161/201 (80%)
Frame = +1
Query: 67 MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
MSGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR MG
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
VM+++ FSLAE KF +G+ + +QNV K+Q+K+R+ K+NVAGV LPVFE +EG SY
Sbjct: 61 VMREAAFSLAEAKFT-AGDFSTTAIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119
Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
ELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVNAIEHVIIP+
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPR 179
Query: 607 IERTVQYIIQELDEREREEFY 669
IERT+ YII ELDEREREEFY
Sbjct: 180 IERTLAYIITELDEREREEFY 200
>sp|P39942|VATD_BOVIN Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 261 bits (667), Expect = 2e-69
Identities = 136/201 (67%), Positives = 161/201 (80%)
Frame = +1
Query: 67 MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
MSGKDRI IFPSRMAQT MK RLKGAQ G +LLKKKSDALT++FR MG
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
VM+++ FSLAE KF +G+ + V+QNV K+Q+K+R+ K+NVAGV LPVFE +EG SY
Sbjct: 61 VMREAAFSLAEAKFT-AGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSY 119
Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
ELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVTLDE IK TNRRVN IEHVIIP+
Sbjct: 120 ELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNRIEHVIIPR 179
Query: 607 IERTVQYIIQELDEREREEFY 669
IERT+ YII ELDEREREEFY
Sbjct: 180 IERTLAYIITELDEREREEFY 200
>sp|Q9V7D2|VATD1_DROME Vacuolar ATP synthase subunit D 1 (V-ATPase D subunit 1) (Vacuolar
proton pump D subunit 1) (dV-ATPase D)
Length = 246
Score = 261 bits (666), Expect = 2e-69
Identities = 138/201 (68%), Positives = 158/201 (78%)
Frame = +1
Query: 67 MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
MSGKDR+ IFPSR AQ MK RL GAQKGH LLKKK+DAL M+FR MG
Sbjct: 1 MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGKIIETKTLMGD 60
Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
VMK++ FSLAE KF SG+INQ+VLQNVTK+QIK+R+ K+NVAGV LPVFE +G +Y
Sbjct: 61 VMKEAAFSLAEAKFT-SGDINQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGSDTY 119
Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
EL GL+ GGQQ+ +LKKNY A+ LLV LASLQTSFVTLDEVIK TNRRVNAIEHVIIP+
Sbjct: 120 ELAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR 179
Query: 607 IERTVQYIIQELDEREREEFY 669
I+RT+ YII ELDE EREEFY
Sbjct: 180 IDRTLAYIISELDELEREEFY 200
>sp|Q9NEF6|VATD2_DROME Probable vacuolar ATP synthase subunit D 2 (V-ATPase D subunit 2)
(Vacuolar proton pump D subunit 2)
Length = 249
Score = 255 bits (652), Expect = 1e-67
Identities = 134/201 (66%), Positives = 158/201 (78%)
Frame = +1
Query: 67 MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
M+ KDR+ IFPSR AQT MK RL GA KGH LLKKK+DAL M+FR MG
Sbjct: 1 MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQ 60
Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
VMK++ FSLAEVKF +G+INQ+VLQNVTK+QIK+R+ K+NVAGV LP+FE +G +Y
Sbjct: 61 VMKEAAFSLAEVKFT-TGDINQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTY 119
Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
EL GL+ GGQQ+ +LKKNY A+ LLV LASLQTSFVTLD+VIK TNRRVNAIEHVIIP+
Sbjct: 120 ELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPR 179
Query: 607 IERTVQYIIQELDEREREEFY 669
I RT++YII ELDE EREEFY
Sbjct: 180 INRTIEYIISELDELEREEFY 200
>sp|P57747|VATD_SUBDO Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 250
Score = 255 bits (652), Expect = 1e-67
Identities = 132/201 (65%), Positives = 160/201 (79%)
Frame = +1
Query: 67 MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
MSGKDRIN+FPSRMA T MK RLKGAQKGHSLLK+K+DALT++FR MG
Sbjct: 1 MSGKDRINVFPSRMALTLMKARLKGAQKGHSLLKRKADALTLRFRQILGKIIETKTLMGE 60
Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
VMK++ FSLAE KF +G+ ++MVLQNV K++I++ + K+NVAGV LPVFE ++G +Y
Sbjct: 61 VMKEATFSLAEAKFV-AGDFSEMVLQNVDKAKIRLHTKKDNVAGVTLPVFETYSDGSDTY 119
Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
ELTGLS GGQ + + K+ + KA+ LLV LASLQT+FVTLDEVIK TNRRVNAIEHVIIPK
Sbjct: 120 ELTGLSRGGQLVSKCKEVFGKAVRLLVELASLQTAFVTLDEVIKVTNRRVNAIEHVIIPK 179
Query: 607 IERTVQYIIQELDEREREEFY 669
I+RT+ YI ELDEREREEFY
Sbjct: 180 IQRTLSYISIELDEREREEFY 200
>sp|Q9U0S4|VATD_MANSE Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 246
Score = 254 bits (650), Expect = 2e-67
Identities = 134/201 (66%), Positives = 157/201 (78%)
Frame = +1
Query: 67 MSGKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGG 246
MSGKDR+ IFPSR AQ MK RL GAQKGH LLKKK+DAL ++FR MG
Sbjct: 1 MSGKDRLAIFPSRGAQMLMKGRLAGAQKGHGLLKKKADALQVRFRLILSKIIETKTLMGE 60
Query: 247 VMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSY 426
VMK++ FSLAE KF +G+ NQ+VLQNVTK+QIK+RS K+NVAGV LP+FE +G +Y
Sbjct: 61 VMKEAAFSLAEAKFT-TGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTY 119
Query: 427 ELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPK 606
EL GL+ GGQQ+ +LKKN+ A+ LLV LASLQTSFVTLDEVIK TNRRVNAIEHVIIP+
Sbjct: 120 ELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPR 179
Query: 607 IERTVQYIIQELDEREREEFY 669
+ERT+ YII ELDE EREEFY
Sbjct: 180 LERTLAYIISELDELEREEFY 200
>sp|P34462|VATD_CAEEL Probable vacuolar ATP synthase subunit D (V-ATPase D subunit)
(Vacuolar proton pump D subunit)
Length = 257
Score = 243 bits (620), Expect = 5e-64
Identities = 125/199 (62%), Positives = 151/199 (75%)
Frame = +1
Query: 73 GKDRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMGGVM 252
GKDRI +FPSRMAQT MK RLKGAQKGHSLLKKK+DAL ++FR MG VM
Sbjct: 5 GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64
Query: 253 KDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEVINEGGSSYEL 432
K++ FSLAE KF +G+ + V+QNV+++Q +VR KENV GV LPVF+ +G +Y+L
Sbjct: 65 KEAAFSLAEAKFT-AGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDL 123
Query: 433 TGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVIIPKIE 612
TGL GG I RLKKNY KA++LLV LA+LQT F+TLDE IK TNRRVNAIEHVIIP+IE
Sbjct: 124 TGLGKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIE 183
Query: 613 RTVQYIIQELDEREREEFY 669
T+ YI+ ELDE EREEF+
Sbjct: 184 NTLTYIVTELDEMEREEFF 202
>sp|P87220|VATD_CANAL Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 267
Score = 201 bits (512), Expect = 2e-51
Identities = 109/203 (53%), Positives = 145/203 (71%), Gaps = 2/203 (0%)
Frame = +1
Query: 67 MSGK-DRINIFPSRMAQTAMKLRLKGAQKGHSLLKKKSDALTMKFRXXXXXXXXXXXXMG 243
MSG +R +FP+RM MK +LKGAQ+GHSLLK+KS+ALT +FR MG
Sbjct: 1 MSGAGNREQVFPTRMTLGVMKSKLKGAQQGHSLLKRKSEALTKRFRDITQRIDDAKRKMG 60
Query: 244 GVMKDSNFSLAEVKFAHSGNINQMVLQNVTKSQIKVRSAKENVAGVVLPVFEV-INEGGS 420
VM+ + FSLAEV++A NI+ V ++V K++ V++ +ENV+GV LP F+ INE +
Sbjct: 61 RVMQTAAFSLAEVQYATGDNISYQVQESVQKARFTVKAKQENVSGVFLPTFDSHINEDVN 120
Query: 421 SYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVTLDEVIKATNRRVNAIEHVII 600
++LT L+ GGQQ+ + K Y+KA++ LV LASLQT+F+ LDEVIK TNRRVNAIEHVII
Sbjct: 121 DFKLTALARGGQQVQKAKLIYSKAVETLVELASLQTAFIILDEVIKITNRRVNAIEHVII 180
Query: 601 PKIERTVQYIIQELDEREREEFY 669
P+ E T+ YI ELDE +REEFY
Sbjct: 181 PRTENTIAYINGELDEMDREEFY 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,163,850
Number of Sequences: 369166
Number of extensions: 1419602
Number of successful extensions: 4050
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4014
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)