Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_D22
(543 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y5K8|VATD_HUMAN Vacuolar ATP synthase subunit D (V-ATP... 159 4e-39
sp|P57746|VATD_MOUSE Vacuolar ATP synthase subunit D (V-ATP... 159 4e-39
sp|O97755|VATD_RABIT Vacuolar ATP synthase subunit D (V-ATP... 159 4e-39
sp|P39942|VATD_BOVIN Vacuolar ATP synthase subunit D (V-ATP... 157 2e-38
sp|Q9V7D2|VATD1_DROME Vacuolar ATP synthase subunit D 1 (V-... 151 1e-36
sp|Q9U0S4|VATD_MANSE Vacuolar ATP synthase subunit D (V-ATP... 150 1e-36
sp|Q9NEF6|VATD2_DROME Probable vacuolar ATP synthase subuni... 149 3e-36
sp|P57747|VATD_SUBDO Vacuolar ATP synthase subunit D (V-ATP... 147 2e-35
sp|P34462|VATD_CAEEL Probable vacuolar ATP synthase subunit... 143 3e-34
sp|O59941|VATD_NEUCR Vacuolar ATP synthase subunit D (V-ATP... 129 4e-30
>sp|Q9Y5K8|VATD_HUMAN Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 159 bits (402), Expect = 4e-39
Identities = 80/103 (77%), Positives = 91/103 (88%)
Frame = +2
Query: 8 KENVAGVVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVT 187
K+NVAGV LPVFE +EG SYELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVT
Sbjct: 98 KDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVT 157
Query: 188 LDEVIKATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 316
LDE IK TNRRVNAIEHVIIP+IERT+ YII ELDEREREEFY
Sbjct: 158 LDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFY 200
>sp|P57746|VATD_MOUSE Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 159 bits (402), Expect = 4e-39
Identities = 80/103 (77%), Positives = 91/103 (88%)
Frame = +2
Query: 8 KENVAGVVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVT 187
K+NVAGV LPVFE +EG SYELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVT
Sbjct: 98 KDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVT 157
Query: 188 LDEVIKATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 316
LDE IK TNRRVNAIEHVIIP+IERT+ YII ELDEREREEFY
Sbjct: 158 LDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFY 200
>sp|O97755|VATD_RABIT Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 159 bits (402), Expect = 4e-39
Identities = 80/103 (77%), Positives = 91/103 (88%)
Frame = +2
Query: 8 KENVAGVVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVT 187
K+NVAGV LPVFE +EG SYELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVT
Sbjct: 98 KDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVT 157
Query: 188 LDEVIKATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 316
LDE IK TNRRVNAIEHVIIP+IERT+ YII ELDEREREEFY
Sbjct: 158 LDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFY 200
>sp|P39942|VATD_BOVIN Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit) (V-ATPase 28 kDa accessory
protein)
Length = 247
Score = 157 bits (397), Expect = 2e-38
Identities = 79/103 (76%), Positives = 90/103 (87%)
Frame = +2
Query: 8 KENVAGVVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVT 187
K+NVAGV LPVFE +EG SYELTGL+ GG+Q+ +LK+NYAKA++LLV LASLQTSFVT
Sbjct: 98 KDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVT 157
Query: 188 LDEVIKATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 316
LDE IK TNRRVN IEHVIIP+IERT+ YII ELDEREREEFY
Sbjct: 158 LDEAIKITNRRVNRIEHVIIPRIERTLAYIITELDEREREEFY 200
>sp|Q9V7D2|VATD1_DROME Vacuolar ATP synthase subunit D 1 (V-ATPase D subunit 1) (Vacuolar
proton pump D subunit 1) (dV-ATPase D)
Length = 246
Score = 151 bits (381), Expect = 1e-36
Identities = 76/103 (73%), Positives = 86/103 (83%)
Frame = +2
Query: 8 KENVAGVVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVT 187
K+NVAGV LPVFE +G +YEL GL+ GGQQ+ +LKKNY A+ LLV LASLQTSFVT
Sbjct: 98 KDNVAGVTLPVFESYQDGSDTYELAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVT 157
Query: 188 LDEVIKATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 316
LDEVIK TNRRVNAIEHVIIP+I+RT+ YII ELDE EREEFY
Sbjct: 158 LDEVIKITNRRVNAIEHVIIPRIDRTLAYIISELDELEREEFY 200
>sp|Q9U0S4|VATD_MANSE Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 246
Score = 150 bits (380), Expect = 1e-36
Identities = 75/105 (71%), Positives = 87/105 (82%)
Frame = +2
Query: 2 SAKENVAGVVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSF 181
S K+NVAGV LP+FE +G +YEL GL+ GGQQ+ +LKKN+ A+ LLV LASLQTSF
Sbjct: 96 SKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSF 155
Query: 182 VTLDEVIKATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 316
VTLDEVIK TNRRVNAIEHVIIP++ERT+ YII ELDE EREEFY
Sbjct: 156 VTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFY 200
>sp|Q9NEF6|VATD2_DROME Probable vacuolar ATP synthase subunit D 2 (V-ATPase D subunit 2)
(Vacuolar proton pump D subunit 2)
Length = 249
Score = 149 bits (377), Expect = 3e-36
Identities = 74/103 (71%), Positives = 86/103 (83%)
Frame = +2
Query: 8 KENVAGVVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVT 187
K+NVAGV LP+FE +G +YEL GL+ GGQQ+ +LKKNY A+ LLV LASLQTSFVT
Sbjct: 98 KDNVAGVTLPIFEPYTDGVDTYELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVT 157
Query: 188 LDEVIKATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 316
LD+VIK TNRRVNAIEHVIIP+I RT++YII ELDE EREEFY
Sbjct: 158 LDDVIKVTNRRVNAIEHVIIPRINRTIEYIISELDELEREEFY 200
>sp|P57747|VATD_SUBDO Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 250
Score = 147 bits (371), Expect = 2e-35
Identities = 74/103 (71%), Positives = 86/103 (83%)
Frame = +2
Query: 8 KENVAGVVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVT 187
K+NVAGV LPVFE ++G +YELTGLS GGQ + + K+ + KA+ LLV LASLQT+FVT
Sbjct: 98 KDNVAGVTLPVFETYSDGSDTYELTGLSRGGQLVSKCKEVFGKAVRLLVELASLQTAFVT 157
Query: 188 LDEVIKATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 316
LDEVIK TNRRVNAIEHVIIPKI+RT+ YI ELDEREREEFY
Sbjct: 158 LDEVIKVTNRRVNAIEHVIIPKIQRTLSYISIELDEREREEFY 200
>sp|P34462|VATD_CAEEL Probable vacuolar ATP synthase subunit D (V-ATPase D subunit)
(Vacuolar proton pump D subunit)
Length = 257
Score = 143 bits (360), Expect = 3e-34
Identities = 70/103 (67%), Positives = 82/103 (79%)
Frame = +2
Query: 8 KENVAGVVLPVFEVINEGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFVT 187
KENV GV LPVF+ +G +Y+LTGL GG I RLKKNY KA++LLV LA+LQT F+T
Sbjct: 100 KENVVGVFLPVFDAYQDGPDAYDLTGLGKGGANIARLKKNYNKAIELLVELATLQTCFIT 159
Query: 188 LDEVIKATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 316
LDE IK TNRRVNAIEHVIIP+IE T+ YI+ ELDE EREEF+
Sbjct: 160 LDEAIKVTNRRVNAIEHVIIPRIENTLTYIVTELDEMEREEFF 202
>sp|O59941|VATD_NEUCR Vacuolar ATP synthase subunit D (V-ATPase D subunit) (Vacuolar
proton pump D subunit)
Length = 264
Score = 129 bits (325), Expect = 4e-30
Identities = 64/104 (61%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Frame = +2
Query: 8 KENVAGVVLPVFEVIN-EGGSSYELTGLSGGGQQIDRLKKNYAKALDLLVNLASLQTSFV 184
+ENV+GV+LP FE EG + +TGL GGQQ+ R ++ YA+A++ LV LASLQT+FV
Sbjct: 100 QENVSGVLLPAFEAYQAEGNDDFAMTGLGKGGQQVQRCRETYARAVEALVELASLQTAFV 159
Query: 185 TLDEVIKATNRRVNAIEHVIIPKIERTVQYIIQELDEREREEFY 316
LDEVIK NRRVNAIEHVIIP+ E T++YI ELDE +REEFY
Sbjct: 160 ILDEVIKVVNRRVNAIEHVIIPRTENTIKYINSELDELDREEFY 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,274,995
Number of Sequences: 369166
Number of extensions: 830874
Number of successful extensions: 2819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2814
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)