DrC_00372
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00372 (1122 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding mot... 138 3e-32 sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding m... 127 4e-29 sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding mot... 127 4e-29 sp|P78332|RBM6_HUMAN RNA-binding protein 6 (RNA-binding mot... 103 9e-22 sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FH... 58 6e-08 sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FH... 57 7e-08 sp|Q9NW75|GPTC2_HUMAN G patch domain containing protein 2 46 2e-04 sp|Q96BK5|PINX1_HUMAN Pin2-interacting protein X1 (TRF1-int... 44 0.001 sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein ... 43 0.001 sp|Q9CZX5|PINX1_MOUSE Pin2-interacting protein X1 (TRF1-int... 43 0.001
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding motif protein 5) (Putative tumor suppressor LUCA15) (G15 protein) Length = 815 Score = 138 bits (347), Expect = 3e-32 Identities = 78/211 (36%), Positives = 124/211 (58%), Gaps = 2/211 (0%) Frame = +1 Query: 406 LVAAYSGDSDEDIDSVVILTPPASKSPNTLLREEEEKLINWDKIACHLCNRGFKDRSMLE 585 LVAAYSGDSD + + V L EEEKL +W K+AC LC R F ++ L Sbjct: 616 LVAAYSGDSDNEEELV------------ERLESEEEKLADWKKMACLLCRRQFPNKDALV 663 Query: 586 KHRSISDLHRKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKERREKFGIPSPP-TKR 762 +H+ +SDLH++N++ R + + + + + + +KYRDRA ERREK+GIP PP KR Sbjct: 664 RHQQLSDLHKQNMDIYR-RSRLSEQELEALELREREMKYRDRAAERREKYGIPEPPEPKR 722 Query: 763 KYESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTT 942 K + D + E T + + ++M++ MGW +G GLG+ QG T ++A+ Sbjct: 723 KKQFDAGTVNY-EQPTKDGIDHSNIG-NKMLQAMGWREGSGLGRKCQGITAPIEAQVRLK 780 Query: 943 GAGIGA-APKFNSAPSDSYRENLKRAMYAKY 1032 GAG+GA + + +DSY++ +++AM+A++ Sbjct: 781 GAGLGAKGSAYGLSGADSYKDAVRKAMFARF 811
Score = 60.5 bits (145), Expect = 9e-09
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
YYYD TGLYYD NSQY+++ L+Q+Y+YWD K TY
Sbjct: 470 YYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY 505
Score = 32.7 bits (73), Expect = 1.9
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +3
Query: 207 SKKIAKEMEKWEKMMNSKKETVQNNMKNV 293
+++IAK+ME+W K +N +KE +N+ + V
Sbjct: 537 AQQIAKDMERWAKSLNKQKENFKNSFQPV 565
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding motif protein 10) (DXS8237E) Length = 929 Score = 127 bits (320), Expect = 4e-29 Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 4/216 (1%) Frame = +1 Query: 406 LVAAYSGDSDEDIDSVVILTPPASKSPNTLLREEEEKLINWDKIACHLCNRGFKDRSMLE 585 LVAAYSG+SD + + P E EEKL +W K+AC LC R F + L Sbjct: 727 LVAAYSGESDSEEEQ-------ERGGP-----EREEKLTDWQKLACLLCRRQFPSKEALI 774 Query: 586 KHRSISDLHRKNIEQLREKLGIPDNSASVMSV-PMKAIKYRDRAKERREKFGIPSP--PT 756 +H+ +S LH++N+E + + + +N + M+ +KYRDRA ERREK+GIP P P Sbjct: 775 RHQQLSGLHKQNLE-IHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPK 833 Query: 757 KRKYESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFH 936 +RKY E T + + SRM++ MGW +G GLG+ QG ++A+ Sbjct: 834 RRKYGGISTASVDFEQPTRDGLGSDNIG-SRMLQAMGWKEGSGLGRKKQGIVTPIEAQTR 892 Query: 937 TTGAGIGA-APKFNSAPSDSYRENLKRAMYAKYHDA 1041 G+G+GA + ++SY+E L + M ++++A Sbjct: 893 VRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEA 928
Score = 57.0 bits (136), Expect = 1e-07
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
YYYD TGLYYD NSQY+++ SQ+Y+YWD + TY
Sbjct: 579 YYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTY 614
Score = 31.2 bits (69), Expect = 5.7
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = +3
Query: 207 SKKIAKEMEKWEKMMNSKKETVQNNMKNV 293
+++IAK+ME+W + +N +KE +N+ + +
Sbjct: 647 AQQIAKDMERWARSLNKQKENFKNSFQPI 675
>sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding motif protein 10) (S1-1 protein) Length = 852 Score = 127 bits (320), Expect = 4e-29 Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 4/216 (1%) Frame = +1 Query: 406 LVAAYSGDSDEDIDSVVILTPPASKSPNTLLREEEEKLINWDKIACHLCNRGFKDRSMLE 585 LVAAYSG+SD + + P E EEKL +W K+AC LC R F + L Sbjct: 650 LVAAYSGESDSEEEQ-------ERGGP-----EREEKLTDWQKLACLLCRRQFPSKEALI 697 Query: 586 KHRSISDLHRKNIEQLREKLGIPDNSASVMSV-PMKAIKYRDRAKERREKFGIPSP--PT 756 +H+ +S LH++N+E + + + +N + M+ +KYRDRA ERREK+GIP P P Sbjct: 698 RHQQLSGLHKQNLE-IHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPK 756 Query: 757 KRKYESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFH 936 +RKY E T + + SRM++ MGW +G GLG+ QG ++A+ Sbjct: 757 RRKYGGISTASVDFEQPTRDGLGSDNIG-SRMLQAMGWKEGSGLGRKKQGIVTPIEAQTR 815 Query: 937 TTGAGIGA-APKFNSAPSDSYRENLKRAMYAKYHDA 1041 G+G+GA + ++SY+E L + M ++++A Sbjct: 816 VRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEA 851
Score = 57.0 bits (136), Expect = 1e-07
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
YYYD TGLYYD NSQY+++ SQ+Y+YWD + TY
Sbjct: 502 YYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTY 537
Score = 31.2 bits (69), Expect = 5.7
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = +3
Query: 207 SKKIAKEMEKWEKMMNSKKETVQNNMKNV 293
+++IAK+ME+W + +N +KE +N+ + +
Sbjct: 570 AQQIAKDMERWARSLNKQKENFKNSFQPI 598
>sp|P78332|RBM6_HUMAN RNA-binding protein 6 (RNA-binding motif protein 6) (RNA-binding protein DEF-3) (Lung cancer antigen NY-LU-12) (Protein G16) Length = 1123 Score = 103 bits (257), Expect = 9e-22 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 15/237 (6%) Frame = +1 Query: 373 PLDKVMYKNDDLVAAYSGDSDEDIDSVVILTPPAS--------KSPNTLLREEEEKLINW 528 P KV+ L+ Y GDSD + + TPP + T EE+KL +W Sbjct: 893 PPPKVVNPLIGLLGEYGGDSDYEEEEEEEQTPPPQPRTAQPQKREEQTKKENEEDKLTDW 952 Query: 529 DKIACHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKLGIPDNSASVMSVPMKAIKYRD 708 +K+AC LC R F ++ +L KH+ +SDLH++N+E + K+ + + + + K++ Sbjct: 953 NKLACLLCRRQFPNKEVLIKHQQLSDLHKQNLE-IHRKIKQSEQELAYLERREREGKFKG 1011 Query: 709 RAKERREKF-GIPSPPTKR-KY----ESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGW 870 R +RREK SP KR KY +SD + ++ T K + + GW Sbjct: 1012 RGNDRREKLQSFDSPERKRIKYSRETDSDRKLVDKEDIDT-------SSKGGCVQQATGW 1064 Query: 871 TQGQGLGKSNQGRTEIVQAEFHTTGAGIGAAPKFNSAPS-DSYRENLKRAMYAKYHD 1038 +G GLG + G +AE G +GA+ + + S ++YR+ ++R M+A+Y + Sbjct: 1065 RKGTGLGYGHPGLASSEEAEGRMRGPSVGASGRTSKRQSNETYRDAVRRVMFARYKE 1121
>sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FHA domains 1 (Angiogenic factor VG5Q) (Vasculogenesis gene on 5q) (hVG5Q) Length = 714 Score = 57.8 bits (138), Expect = 6e-08 Identities = 40/115 (34%), Positives = 60/115 (52%) Frame = +1 Query: 613 RKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKERREKFGIPSPPTKRKYESDLPEIP 792 RK ++++R K G+ N+ +K KY+DRA +RRE+ G S T ++ D P Sbjct: 559 RKELKKIRVKYGL-QNTEYEDEKTLKNPKYKDRAGKRREQVG--SEGTFQR--DDAPASV 613 Query: 793 LPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIG 957 E+T K +M+EKMGW +G+GLGK G +Q + T AG+G Sbjct: 614 HSEITD-------SNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLG 661
Score = 33.9 bits (76), Expect = 0.87
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
+ YD TGLY+D ++ +++D S+ +Y+DP+ Y
Sbjct: 207 FSYDENTGLYFDHSTGFYYD--SENQLYYDPSTGIY 240
Score = 33.9 bits (76), Expect = 0.87
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 7 YYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
Y+D TG YYDS +Q ++D + Y Y D Y
Sbjct: 216 YFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRY 250
>sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FHA domains 1 (Angiogenic factor VG5Q) (mVG5Q) Length = 711 Score = 57.4 bits (137), Expect = 7e-08 Identities = 40/115 (34%), Positives = 60/115 (52%) Frame = +1 Query: 613 RKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKERREKFGIPSPPTKRKYESDLPEIP 792 RK ++++R K G+ N+ +K KY+DRA +RRE+ G S T ++ D P Sbjct: 556 RKALKKIRVKYGL-QNTDYEAEKALKNPKYKDRAGKRREQVG--SEGTFQR--DDAPASV 610 Query: 793 LPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIG 957 E+T K +M+EKMGW +G+GLGK G +Q + T AG+G Sbjct: 611 HSEITD-------SNKGRKMLEKMGWKRGEGLGKDGGGMKTPIQLQLRRTHAGLG 658
Score = 34.3 bits (77), Expect = 0.67
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
+ YD TGLY+D ++ +++D S+ +Y+DP+ Y
Sbjct: 207 FTYDESTGLYFDHSTGFYYD--SENQLYYDPSTGIY 240
Score = 33.9 bits (76), Expect = 0.87
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 7 YYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
Y+D TG YYDS +Q ++D + Y Y D Y
Sbjct: 216 YFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRY 250
>sp|Q9NW75|GPTC2_HUMAN G patch domain containing protein 2 Length = 528 Score = 46.2 bits (108), Expect = 2e-04 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 7/71 (9%) Frame = +1 Query: 790 PLPEVTTVPSV---AQPEVKVS---RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAG 951 PLP TT V AQP ++ + RM++ MGWT G GLG+ +G +E +QA G G Sbjct: 448 PLPGPTTAGFVGENAQPILENNIGNRMLQNMGWTPGSGLGRDGKGISEPIQAMQRPKGLG 507 Query: 952 IG-AAPKFNSA 981 +G PK SA Sbjct: 508 LGFPLPKSTSA 518
>sp|Q96BK5|PINX1_HUMAN Pin2-interacting protein X1 (TRF1-interacting protein 1) (Liver-related putative tumor suppressor) (67-11-3 protein) Length = 328 Score = 43.5 bits (101), Expect = 0.001 Identities = 17/38 (44%), Positives = 26/38 (68%) Frame = +1 Query: 847 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA 960 RM+EKMGW++G+GLG QG T+ ++ + G+GA Sbjct: 32 RMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGA 69
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplast precursor Length = 387 Score = 43.1 bits (100), Expect = 0.001 Identities = 21/36 (58%), Positives = 24/36 (66%) Frame = +1 Query: 847 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGI 954 RMM KMGW QGQGLGKS QG T + A+ AG+ Sbjct: 220 RMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGV 255
>sp|Q9CZX5|PINX1_MOUSE Pin2-interacting protein X1 (TRF1-interacting protein 1) (Liver-related putative tumor suppressor) (LPTS1) (67-11-3 protein) Length = 332 Score = 43.1 bits (100), Expect = 0.001 Identities = 17/38 (44%), Positives = 26/38 (68%) Frame = +1 Query: 847 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA 960 +M+EKMGW++G+GLG QG TE ++ + G+GA Sbjct: 32 KMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNHLGLGA 69
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,243,674
Number of Sequences: 369166
Number of extensions: 2314089
Number of successful extensions: 8079
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8033
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12440476260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
