Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_O10
(584 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding mot... 97 2e-20
sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding m... 93 4e-19
sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding mot... 93 4e-19
sp|P78332|RBM6_HUMAN RNA-binding protein 6 (RNA-binding mot... 63 5e-10
sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FH... 58 2e-08
sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FH... 57 3e-08
sp|Q9NW75|GPTC2_HUMAN G patch domain containing protein 2 45 2e-04
sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein ... 44 3e-04
sp|Q96BK5|PINX1_HUMAN Pin2-interacting protein X1 (TRF1-int... 44 4e-04
sp|Q9CZX5|PINX1_MOUSE Pin2-interacting protein X1 (TRF1-int... 43 5e-04
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding motif protein 5) (Putative tumor
suppressor LUCA15) (G15 protein)
Length = 815
Score = 97.4 bits (241), Expect = 2e-20
Identities = 52/141 (36%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Frame = +2
Query: 2 CHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKE 181
C LC R F ++ L +H+ +SDLH++N++ R + + + + + +KYRDRA E
Sbjct: 649 CLLCRRQFPNKDALVRHQQLSDLHKQNMDIYRRSR-LSEQELEALELREREMKYRDRAAE 707
Query: 182 RREKFGIPSPPT-KRKYESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKS 358
RREK+GIP PP KRK + D + E T + + ++M++ MGW +G GLG+
Sbjct: 708 RREKYGIPEPPEPKRKKQFDAGTVNY-EQPTKDGIDHSNIG-NKMLQAMGWREGSGLGRK 765
Query: 359 NQGRTEIVQAEFHTTGAGIGA 421
QG T ++A+ GAG+GA
Sbjct: 766 CQGITAPIEAQVRLKGAGLGA 786
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding motif protein 10) (DXS8237E)
Length = 929
Score = 93.2 bits (230), Expect = 4e-19
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Frame = +2
Query: 2 CHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKLGIPDNSASVMSV-PMKAIKYRDRAK 178
C LC R F + L +H+ +S LH++N+E + + + +N + M+ +KYRDRA
Sbjct: 760 CLLCRRQFPSKEALIRHQQLSGLHKQNLE-IHRRAHLSENELEALEKNDMEQMKYRDRAA 818
Query: 179 ERREKFGIPSPPT--KRKYESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLG 352
ERREK+GIP PP +RKY E T + + SRM++ MGW +G GLG
Sbjct: 819 ERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIG-SRMLQAMGWKEGSGLG 877
Query: 353 KSNQGRTEIVQAEFHTTGAGIGA 421
+ QG ++A+ G+G+GA
Sbjct: 878 RKKQGIVTPIEAQTRVRGSGLGA 900
>sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding motif protein 10) (S1-1 protein)
Length = 852
Score = 93.2 bits (230), Expect = 4e-19
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Frame = +2
Query: 2 CHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKLGIPDNSASVMSV-PMKAIKYRDRAK 178
C LC R F + L +H+ +S LH++N+E + + + +N + M+ +KYRDRA
Sbjct: 683 CLLCRRQFPSKEALIRHQQLSGLHKQNLE-IHRRAHLSENELEALEKNDMEQMKYRDRAA 741
Query: 179 ERREKFGIPSPPT--KRKYESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLG 352
ERREK+GIP PP +RKY E T + + SRM++ MGW +G GLG
Sbjct: 742 ERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIG-SRMLQAMGWKEGSGLG 800
Query: 353 KSNQGRTEIVQAEFHTTGAGIGA 421
+ QG ++A+ G+G+GA
Sbjct: 801 RKKQGIVTPIEAQTRVRGSGLGA 823
>sp|P78332|RBM6_HUMAN RNA-binding protein 6 (RNA-binding motif protein 6) (RNA-binding
protein DEF-3) (Lung cancer antigen NY-LU-12) (Protein
G16)
Length = 1123
Score = 63.2 bits (152), Expect = 5e-10
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Frame = +2
Query: 2 CHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKE 181
C LC R F ++ +L KH+ +SDLH++N+E + K+ + + + + K++ R +
Sbjct: 957 CLLCRRQFPNKEVLIKHQQLSDLHKQNLE-IHRKIKQSEQELAYLERREREGKFKGRGND 1015
Query: 182 RREKF-GIPSPPTKR-KY----ESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGWTQGQ 343
RREK SP KR KY +SD + ++ T K + + GW +G
Sbjct: 1016 RREKLQSFDSPERKRIKYSRETDSDRKLVDKEDIDT-------SSKGGCVQQATGWRKGT 1068
Query: 344 GLGKSNQGRTEIVQAEFHTTGAGIGAA 424
GLG + G +AE G +GA+
Sbjct: 1069 GLGYGHPGLASSEEAEGRMRGPSVGAS 1095
>sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FHA domains 1 (Angiogenic factor
VG5Q) (Vasculogenesis gene on 5q) (hVG5Q)
Length = 714
Score = 57.8 bits (138), Expect = 2e-08
Identities = 40/115 (34%), Positives = 60/115 (52%)
Frame = +2
Query: 74 RKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKERREKFGIPSPPTKRKYESDLPEIP 253
RK ++++R K G+ N+ +K KY+DRA +RRE+ G S T ++ D P
Sbjct: 559 RKELKKIRVKYGL-QNTEYEDEKTLKNPKYKDRAGKRREQVG--SEGTFQR--DDAPASV 613
Query: 254 LPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIG 418
E+T K +M+EKMGW +G+GLGK G +Q + T AG+G
Sbjct: 614 HSEITD-------SNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLG 661
>sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FHA domains 1 (Angiogenic factor
VG5Q) (mVG5Q)
Length = 711
Score = 57.4 bits (137), Expect = 3e-08
Identities = 40/115 (34%), Positives = 60/115 (52%)
Frame = +2
Query: 74 RKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKERREKFGIPSPPTKRKYESDLPEIP 253
RK ++++R K G+ N+ +K KY+DRA +RRE+ G S T ++ D P
Sbjct: 556 RKALKKIRVKYGL-QNTDYEAEKALKNPKYKDRAGKRREQVG--SEGTFQR--DDAPASV 610
Query: 254 LPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIG 418
E+T K +M+EKMGW +G+GLGK G +Q + T AG+G
Sbjct: 611 HSEITD-------SNKGRKMLEKMGWKRGEGLGKDGGGMKTPIQLQLRRTHAGLG 658
>sp|Q9NW75|GPTC2_HUMAN G patch domain containing protein 2
Length = 528
Score = 44.7 bits (104), Expect = 2e-04
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Frame = +2
Query: 251 PLPEVTTVPSV---AQPEVKVS---RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAG 412
PLP TT V AQP ++ + RM++ MGWT G GLG+ +G +E +QA G G
Sbjct: 448 PLPGPTTAGFVGENAQPILENNIGNRMLQNMGWTPGSGLGRDGKGISEPIQAMQRPKGLG 507
Query: 413 IG 418
+G
Sbjct: 508 LG 509
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplast precursor
Length = 387
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/46 (52%), Positives = 27/46 (58%)
Frame = +2
Query: 308 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGAAPKFNYSS 445
RMM KMGW QGQGLGKS QG T + A+ AG+ N SS
Sbjct: 220 RMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGVIVNASENKSS 265
>sp|Q96BK5|PINX1_HUMAN Pin2-interacting protein X1 (TRF1-interacting protein 1)
(Liver-related putative tumor suppressor) (67-11-3
protein)
Length = 328
Score = 43.5 bits (101), Expect = 4e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 308 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA 421
RM+EKMGW++G+GLG QG T+ ++ + G+GA
Sbjct: 32 RMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGA 69
>sp|Q9CZX5|PINX1_MOUSE Pin2-interacting protein X1 (TRF1-interacting protein 1)
(Liver-related putative tumor suppressor) (LPTS1)
(67-11-3 protein)
Length = 332
Score = 43.1 bits (100), Expect = 5e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 308 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA 421
+M+EKMGW++G+GLG QG TE ++ + G+GA
Sbjct: 32 KMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNHLGLGA 69
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,916,955
Number of Sequences: 369166
Number of extensions: 1354042
Number of successful extensions: 4867
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4838
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)