Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_O13
(811 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding mot... 107 4e-23
sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding m... 99 1e-20
sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding mot... 99 1e-20
sp|P78332|RBM6_HUMAN RNA-binding protein 6 (RNA-binding mot... 75 2e-13
sp|O60281|ZN292_HUMAN Zinc finger protein 292 35 0.19
sp|P53863|YNW7_YEAST Hypothetical 68.8 kDa protein in URE2-... 35 0.24
sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FH... 34 0.41
sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FH... 34 0.54
sp|P36080|YKI2_YEAST Hypothetical 50.5 kDa protein in MDH1-... 33 1.2
sp|O31575|RECX_BACSU Regulatory protein recX 32 1.6
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding motif protein 5) (Putative tumor
suppressor LUCA15) (G15 protein)
Length = 815
Score = 107 bits (267), Expect = 4e-23
Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 14/204 (6%)
Frame = +3
Query: 207 SKKIAKEMEKWEKMMNSKKETVQNNMKKFEPEVKQXXXXXXXXXXXXXXXXYSGLPLDKV 386
+++IAK+ME+W K +N +KE +N+ + ++ G ++
Sbjct: 537 AQQIAKDMERWAKSLNKQKENFKNSFQPVNSLREEERRESAAADAGFALFEKKGALAERQ 596
Query: 387 -----MYKNDD--------LVAAYSGDSDEDIDSVVILTPPASKSPNTLLREEEEKLINW 527
+ +N D LVAAYSGDSD + + V L EEEKL +W
Sbjct: 597 QLIPELVRNGDEENPLKRGLVAAYSGDSDNEEELV------------ERLESEEEKLADW 644
Query: 528 DKIACHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKLGIPDNSASVMSVPMKAIKYRD 707
K+AC LC R F ++ L +H+ +SDLH++N++ R + + + + + + +KYRD
Sbjct: 645 KKMACLLCRRQFPNKDALVRHQQLSDLHKQNMDIYR-RSRLSEQELEALELREREMKYRD 703
Query: 708 RAKERREKFGIPSPP-TKRKYESD 776
RA ERREK+GIP PP KRK + D
Sbjct: 704 RAAERREKYGIPEPPEPKRKKQFD 727
Score = 60.5 bits (145), Expect = 5e-09
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
YYYD TGLYYD NSQY+++ L+Q+Y+YWD K TY
Sbjct: 470 YYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY 505
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding motif protein 10) (DXS8237E)
Length = 929
Score = 99.4 bits (246), Expect = 1e-20
Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 19/206 (9%)
Frame = +3
Query: 207 SKKIAKEMEKWEKMMNSKKETVQNNMKKF---------EPEVKQXXXXXXXXXXXXXXXX 359
+++IAK+ME+W + +N +KE +N+ + E
Sbjct: 647 AQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQ 706
Query: 360 YSGLPLDKVMYKNDD-------LVAAYSGDSDEDIDSVVILTPPASKSPNTLLREEEEKL 518
++ + L K+ +DD LVAAYSG+SD + + P E EEKL
Sbjct: 707 HTSMDLPKLA--SDDRPSPPRGLVAAYSGESDSEEEQ-------ERGGP-----EREEKL 752
Query: 519 INWDKIACHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKLGIPDNSASVMSV-PMKAI 695
+W K+AC LC R F + L +H+ +S LH++N+E + + + +N + M+ +
Sbjct: 753 TDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLE-IHRRAHLSENELEALEKNDMEQM 811
Query: 696 KYRDRAKERREKFGIPSP--PTKRKY 767
KYRDRA ERREK+GIP P P +RKY
Sbjct: 812 KYRDRAAERREKYGIPEPPEPKRRKY 837
Score = 57.0 bits (136), Expect = 6e-08
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
YYYD TGLYYD NSQY+++ SQ+Y+YWD + TY
Sbjct: 579 YYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTY 614
>sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding motif protein 10) (S1-1 protein)
Length = 852
Score = 99.4 bits (246), Expect = 1e-20
Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 19/206 (9%)
Frame = +3
Query: 207 SKKIAKEMEKWEKMMNSKKETVQNNMKKF---------EPEVKQXXXXXXXXXXXXXXXX 359
+++IAK+ME+W + +N +KE +N+ + E
Sbjct: 570 AQQIAKDMERWARSLNKQKENFKNSFQPISALRDDERRESATADAGYAILEKKGALAERQ 629
Query: 360 YSGLPLDKVMYKNDD-------LVAAYSGDSDEDIDSVVILTPPASKSPNTLLREEEEKL 518
++ + L K+ +DD LVAAYSG+SD + + P E EEKL
Sbjct: 630 HTSMDLPKLA--SDDRPSPPRGLVAAYSGESDSEEEQ-------ERGGP-----EREEKL 675
Query: 519 INWDKIACHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKLGIPDNSASVMSV-PMKAI 695
+W K+AC LC R F + L +H+ +S LH++N+E + + + +N + M+ +
Sbjct: 676 TDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLE-IHRRAHLSENELEALEKNDMEQM 734
Query: 696 KYRDRAKERREKFGIPSP--PTKRKY 767
KYRDRA ERREK+GIP P P +RKY
Sbjct: 735 KYRDRAAERREKYGIPEPPEPKRRKY 760
Score = 57.0 bits (136), Expect = 6e-08
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
YYYD TGLYYD NSQY+++ SQ+Y+YWD + TY
Sbjct: 502 YYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTY 537
>sp|P78332|RBM6_HUMAN RNA-binding protein 6 (RNA-binding motif protein 6) (RNA-binding
protein DEF-3) (Lung cancer antigen NY-LU-12) (Protein
G16)
Length = 1123
Score = 75.5 bits (184), Expect = 2e-13
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Frame = +3
Query: 372 PLDKVMYKNDDLVAAYSGDSDEDIDSVVILTPPAS--------KSPNTLLREEEEKLINW 527
P KV+ L+ Y GDSD + + TPP + T EE+KL +W
Sbjct: 893 PPPKVVNPLIGLLGEYGGDSDYEEEEEEEQTPPPQPRTAQPQKREEQTKKENEEDKLTDW 952
Query: 528 DKIACHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKLGIPDNSASVMSVPMKAIKYRD 707
+K+AC LC R F ++ +L KH+ +SDLH++N+E + K+ + + + + K++
Sbjct: 953 NKLACLLCRRQFPNKEVLIKHQQLSDLHKQNLE-IHRKIKQSEQELAYLERREREGKFKG 1011
Query: 708 RAKERREKF-GIPSPPTKR-KYESD 776
R +RREK SP KR KY +
Sbjct: 1012 RGNDRREKLQSFDSPERKRIKYSRE 1036
Score = 30.0 bits (66), Expect = 7.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVY 87
Y YD+ TG YYD + ++D +Q+ VY
Sbjct: 790 YIYDSATGYYYDPLAGTYYDPNTQQEVY 817
>sp|O60281|ZN292_HUMAN Zinc finger protein 292
Length = 1969
Score = 35.4 bits (80), Expect = 0.19
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 531 KIACHLCNRGFKDRSMLEKH--RSISDLHRKNIEQLREKLGIPDNSASVMSVPMKAIKYR 704
K C C+R + RS L +H +D H+ ++ + R +N +S + K+R
Sbjct: 1503 KCDCEGCDRIYATRSNLLRHIFNKHNDKHKAHLIRPRRLTPGQENMSSKANQEKSKSKHR 1562
Query: 705 DRAKERREKFGIPSPPTKRKYESDL 779
R K GI P TKRK +++L
Sbjct: 1563 GTKHSRCGKEGIKMPKTKRKKKNNL 1587
>sp|P53863|YNW7_YEAST Hypothetical 68.8 kDa protein in URE2-SSU72 intergenic region
Length = 590
Score = 35.0 bits (79), Expect = 0.24
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +3
Query: 540 CHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKL 644
C +CN+ FK L+ H + + LH+KN+E++R+++
Sbjct: 340 CFICNKTFKSEKQLKNHIN-TKLHKKNMEEIRKEM 373
>sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FHA domains 1 (Angiogenic factor
VG5Q) (mVG5Q)
Length = 711
Score = 34.3 bits (77), Expect = 0.41
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
+ YD TGLY+D ++ +++D S+ +Y+DP+ Y
Sbjct: 207 FTYDESTGLYFDHSTGFYYD--SENQLYYDPSTGIY 240
Score = 33.9 bits (76), Expect = 0.54
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 7 YYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
Y+D TG YYDS +Q ++D + Y Y D Y
Sbjct: 216 YFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRY 250
>sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FHA domains 1 (Angiogenic factor
VG5Q) (Vasculogenesis gene on 5q) (hVG5Q)
Length = 714
Score = 33.9 bits (76), Expect = 0.54
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 4 YYYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
+ YD TGLY+D ++ +++D S+ +Y+DP+ Y
Sbjct: 207 FSYDENTGLYFDHSTGFYYD--SENQLYYDPSTGIY 240
Score = 33.9 bits (76), Expect = 0.54
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 7 YYDTVTGLYYDSNSQYFFDRLSQKYVYWDPAKSTY 111
Y+D TG YYDS +Q ++D + Y Y D Y
Sbjct: 216 YFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRY 250
Score = 30.0 bits (66), Expect = 7.8
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 612 RKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKERREKFG 737
RK ++++R K G+ N+ +K KY+DRA +RRE+ G
Sbjct: 559 RKELKKIRVKYGL-QNTEYEDEKTLKNPKYKDRAGKRREQVG 599
>sp|P36080|YKI2_YEAST Hypothetical 50.5 kDa protein in MDH1-VMA5 intergenic region
Length = 434
Score = 32.7 bits (73), Expect = 1.2
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 13/154 (8%)
Frame = +3
Query: 222 KEMEKWEKMMNSKKETVQNNMKKFEPEVKQXXXXXXXXXXXXXXXXYSG--LPLDKV--- 386
K E+W+ +K+++ + +KK +PE + LP +K
Sbjct: 32 KSQEQWKAKKKTKEQSKNDKLKKLDPEQRDDETSSTLEVMKKKEKDAKPVVLPGEKFKHM 91
Query: 387 -MYKNDDLVAAYSGDSDEDIDSVVILTPPASKSPNTLLREEEEKLINWDKIACHLCNRGF 563
M K + + GDSD +++ + P +P+ EEE+ + +D +
Sbjct: 92 KMQKQKEATSKVEGDSDLNVE----VNDPMIIAPDEDEEEEEDIKVIFDDEGNEIPLESK 147
Query: 564 KDRSMLEK---HRSISD----LHRKNIEQLREKL 644
KD + ++ +SI++ +KN+E LR KL
Sbjct: 148 KDTTEPDRSVEKKSITEEEKLQRKKNLEALRSKL 181
>sp|O31575|RECX_BACSU Regulatory protein recX
Length = 264
Score = 32.3 bits (72), Expect = 1.6
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Frame = +3
Query: 477 KSPNTLLREEEEKLINWDKIACHLCNRGFKDRS---------MLEKHRSISDLHRKNIEQ 629
K P+ L RE K I+ D I L + F+D++ +L+K + +S K Q
Sbjct: 126 KGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTREAVKHVEKLLKKDKKLSTKELKQRAQ 185
Query: 630 LR-EKLGIPDNSASVMSVPMKAIKYRDRAKERREKFGIPSPPTKRKYESD 776
L+ ++ G S V+S M I+Y + +E + + RKY D
Sbjct: 186 LQLQRKGF---SFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYD 232
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,753,537
Number of Sequences: 369166
Number of extensions: 1496586
Number of successful extensions: 5845
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5822
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)