Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_J09
(284 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding mot... 55 4e-08
sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding m... 55 7e-08
sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding mot... 55 7e-08
sp|Q96BK5|PINX1_HUMAN Pin2-interacting protein X1 (TRF1-int... 44 2e-04
sp|Q9NW75|GPTC2_HUMAN G patch domain containing protein 2 43 2e-04
sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein ... 43 2e-04
sp|Q9CZX5|PINX1_MOUSE Pin2-interacting protein X1 (TRF1-int... 43 2e-04
sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FH... 42 4e-04
sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FH... 42 4e-04
sp|P78332|RBM6_HUMAN RNA-binding protein 6 (RNA-binding mot... 42 6e-04
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding motif protein 5) (Putative tumor
suppressor LUCA15) (G15 protein)
Length = 815
Score = 55.5 bits (132), Expect = 4e-08
Identities = 23/64 (35%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 6 SRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA-APKFNSAPSDSYRENLKRAM 182
++M++ MGW +G GLG+ QG T ++A+ GAG+GA + + +DSY++ +++AM
Sbjct: 748 NKMLQAMGWREGSGLGRKCQGITAPIEAQVRLKGAGLGAKGSAYGLSGADSYKDAVRKAM 807
Query: 183 YAKY 194
+A++
Sbjct: 808 FARF 811
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding motif protein 10) (DXS8237E)
Length = 929
Score = 54.7 bits (130), Expect = 7e-08
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 6 SRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA-APKFNSAPSDSYRENLKRAM 182
SRM++ MGW +G GLG+ QG ++A+ G+G+GA + ++SY+E L + M
Sbjct: 862 SRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTM 921
Query: 183 YAKYHDA 203
++++A
Sbjct: 922 VTRFNEA 928
>sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding motif protein 10) (S1-1
protein)
Length = 852
Score = 54.7 bits (130), Expect = 7e-08
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 6 SRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA-APKFNSAPSDSYRENLKRAM 182
SRM++ MGW +G GLG+ QG ++A+ G+G+GA + ++SY+E L + M
Sbjct: 785 SRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTM 844
Query: 183 YAKYHDA 203
++++A
Sbjct: 845 VTRFNEA 851
>sp|Q96BK5|PINX1_HUMAN Pin2-interacting protein X1 (TRF1-interacting protein 1)
(Liver-related putative tumor suppressor) (67-11-3
protein)
Length = 328
Score = 43.5 bits (101), Expect = 2e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 9 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA 122
RM+EKMGW++G+GLG QG T+ ++ + G+GA
Sbjct: 32 RMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGA 69
>sp|Q9NW75|GPTC2_HUMAN G patch domain containing protein 2
Length = 528
Score = 43.1 bits (100), Expect = 2e-04
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 6 SRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIG-AAPKFNSA 143
+RM++ MGWT G GLG+ +G +E +QA G G+G PK SA
Sbjct: 472 NRMLQNMGWTPGSGLGRDGKGISEPIQAMQRPKGLGLGFPLPKSTSA 518
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplast precursor
Length = 387
Score = 43.1 bits (100), Expect = 2e-04
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3
Query: 9 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGI 116
RMM KMGW QGQGLGKS QG T + A+ AG+
Sbjct: 220 RMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGV 255
>sp|Q9CZX5|PINX1_MOUSE Pin2-interacting protein X1 (TRF1-interacting protein 1)
(Liver-related putative tumor suppressor) (LPTS1)
(67-11-3 protein)
Length = 332
Score = 43.1 bits (100), Expect = 2e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 9 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA 122
+M+EKMGW++G+GLG QG TE ++ + G+GA
Sbjct: 32 KMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNHLGLGA 69
>sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FHA domains 1 (Angiogenic factor
VG5Q) (Vasculogenesis gene on 5q) (hVG5Q)
Length = 714
Score = 42.0 bits (97), Expect = 4e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 9 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIG 119
+M+EKMGW +G+GLGK G +Q + T AG+G
Sbjct: 625 KMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLG 661
>sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FHA domains 1 (Angiogenic factor
VG5Q) (mVG5Q)
Length = 711
Score = 42.0 bits (97), Expect = 4e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 9 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIG 119
+M+EKMGW +G+GLGK G +Q + T AG+G
Sbjct: 622 KMLEKMGWKRGEGLGKDGGGMKTPIQLQLRRTHAGLG 658
>sp|P78332|RBM6_HUMAN RNA-binding protein 6 (RNA-binding motif protein 6) (RNA-binding
protein DEF-3) (Lung cancer antigen NY-LU-12) (Protein
G16)
Length = 1123
Score = 41.6 bits (96), Expect = 6e-04
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 12 MMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGAAPKFNSAPS-DSYRENLKRAMYA 188
+ + GW +G GLG + G +AE G +GA+ + + S ++YR+ ++R M+A
Sbjct: 1058 VQQATGWRKGTGLGYGHPGLASSEEAEGRMRGPSVGASGRTSKRQSNETYRDAVRRVMFA 1117
Query: 189 KYHD 200
+Y +
Sbjct: 1118 RYKE 1121
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,762,956
Number of Sequences: 369166
Number of extensions: 552625
Number of successful extensions: 1523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)