Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_M17
(868 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding mot... 138 2e-32
sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding m... 127 3e-29
sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding mot... 127 3e-29
sp|P78332|RBM6_HUMAN RNA-binding protein 6 (RNA-binding mot... 103 6e-22
sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FH... 58 4e-08
sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FH... 57 5e-08
sp|Q9NW75|GPTC2_HUMAN G patch domain containing protein 2 46 1e-04
sp|Q96BK5|PINX1_HUMAN Pin2-interacting protein X1 (TRF1-int... 44 8e-04
sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein ... 43 0.001
sp|Q9CZX5|PINX1_MOUSE Pin2-interacting protein X1 (TRF1-int... 43 0.001
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding motif protein 5) (Putative tumor
suppressor LUCA15) (G15 protein)
Length = 815
Score = 138 bits (347), Expect = 2e-32
Identities = 78/211 (36%), Positives = 124/211 (58%), Gaps = 2/211 (0%)
Frame = +3
Query: 153 LVAAYSGDSDEDIDSVVILTPPASKSPNTLLREEEEKLINWDKIACHLCNRGFKDRSMLE 332
LVAAYSGDSD + + V L EEEKL +W K+AC LC R F ++ L
Sbjct: 616 LVAAYSGDSDNEEELV------------ERLESEEEKLADWKKMACLLCRRQFPNKDALV 663
Query: 333 KHRSISDLHRKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKERREKFGIPSPP-TKR 509
+H+ +SDLH++N++ R + + + + + + +KYRDRA ERREK+GIP PP KR
Sbjct: 664 RHQQLSDLHKQNMDIYR-RSRLSEQELEALELREREMKYRDRAAERREKYGIPEPPEPKR 722
Query: 510 KYESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTT 689
K + D + E T + + ++M++ MGW +G GLG+ QG T ++A+
Sbjct: 723 KKQFDAGTVNY-EQPTKDGIDHSNIG-NKMLQAMGWREGSGLGRKCQGITAPIEAQVRLK 780
Query: 690 GAGIGA-APKFNSAPSDSYRENLKRAMYAKY 779
GAG+GA + + +DSY++ +++AM+A++
Sbjct: 781 GAGLGAKGSAYGLSGADSYKDAVRKAMFARF 811
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding motif protein 10) (DXS8237E)
Length = 929
Score = 127 bits (320), Expect = 3e-29
Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 4/216 (1%)
Frame = +3
Query: 153 LVAAYSGDSDEDIDSVVILTPPASKSPNTLLREEEEKLINWDKIACHLCNRGFKDRSMLE 332
LVAAYSG+SD + + P E EEKL +W K+AC LC R F + L
Sbjct: 727 LVAAYSGESDSEEEQ-------ERGGP-----EREEKLTDWQKLACLLCRRQFPSKEALI 774
Query: 333 KHRSISDLHRKNIEQLREKLGIPDNSASVMSV-PMKAIKYRDRAKERREKFGIPSP--PT 503
+H+ +S LH++N+E + + + +N + M+ +KYRDRA ERREK+GIP P P
Sbjct: 775 RHQQLSGLHKQNLE-IHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPK 833
Query: 504 KRKYESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFH 683
+RKY E T + + SRM++ MGW +G GLG+ QG ++A+
Sbjct: 834 RRKYGGISTASVDFEQPTRDGLGSDNIG-SRMLQAMGWKEGSGLGRKKQGIVTPIEAQTR 892
Query: 684 TTGAGIGA-APKFNSAPSDSYRENLKRAMYAKYHDA 788
G+G+GA + ++SY+E L + M ++++A
Sbjct: 893 VRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEA 928
>sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding motif protein 10) (S1-1 protein)
Length = 852
Score = 127 bits (320), Expect = 3e-29
Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 4/216 (1%)
Frame = +3
Query: 153 LVAAYSGDSDEDIDSVVILTPPASKSPNTLLREEEEKLINWDKIACHLCNRGFKDRSMLE 332
LVAAYSG+SD + + P E EEKL +W K+AC LC R F + L
Sbjct: 650 LVAAYSGESDSEEEQ-------ERGGP-----EREEKLTDWQKLACLLCRRQFPSKEALI 697
Query: 333 KHRSISDLHRKNIEQLREKLGIPDNSASVMSV-PMKAIKYRDRAKERREKFGIPSP--PT 503
+H+ +S LH++N+E + + + +N + M+ +KYRDRA ERREK+GIP P P
Sbjct: 698 RHQQLSGLHKQNLE-IHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPK 756
Query: 504 KRKYESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFH 683
+RKY E T + + SRM++ MGW +G GLG+ QG ++A+
Sbjct: 757 RRKYGGISTASVDFEQPTRDGLGSDNIG-SRMLQAMGWKEGSGLGRKKQGIVTPIEAQTR 815
Query: 684 TTGAGIGA-APKFNSAPSDSYRENLKRAMYAKYHDA 788
G+G+GA + ++SY+E L + M ++++A
Sbjct: 816 VRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEA 851
>sp|P78332|RBM6_HUMAN RNA-binding protein 6 (RNA-binding motif protein 6) (RNA-binding
protein DEF-3) (Lung cancer antigen NY-LU-12) (Protein
G16)
Length = 1123
Score = 103 bits (257), Expect = 6e-22
Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 15/237 (6%)
Frame = +3
Query: 120 PLDKVMYKNDDLVAAYSGDSDEDIDSVVILTPPAS--------KSPNTLLREEEEKLINW 275
P KV+ L+ Y GDSD + + TPP + T EE+KL +W
Sbjct: 893 PPPKVVNPLIGLLGEYGGDSDYEEEEEEEQTPPPQPRTAQPQKREEQTKKENEEDKLTDW 952
Query: 276 DKIACHLCNRGFKDRSMLEKHRSISDLHRKNIEQLREKLGIPDNSASVMSVPMKAIKYRD 455
+K+AC LC R F ++ +L KH+ +SDLH++N+E + K+ + + + + K++
Sbjct: 953 NKLACLLCRRQFPNKEVLIKHQQLSDLHKQNLE-IHRKIKQSEQELAYLERREREGKFKG 1011
Query: 456 RAKERREKF-GIPSPPTKR-KY----ESDLPEIPLPEVTTVPSVAQPEVKVSRMMEKMGW 617
R +RREK SP KR KY +SD + ++ T K + + GW
Sbjct: 1012 RGNDRREKLQSFDSPERKRIKYSRETDSDRKLVDKEDIDT-------SSKGGCVQQATGW 1064
Query: 618 TQGQGLGKSNQGRTEIVQAEFHTTGAGIGAAPKFNSAPS-DSYRENLKRAMYAKYHD 785
+G GLG + G +AE G +GA+ + + S ++YR+ ++R M+A+Y +
Sbjct: 1065 RKGTGLGYGHPGLASSEEAEGRMRGPSVGASGRTSKRQSNETYRDAVRRVMFARYKE 1121
>sp|Q8N302|AGGF1_HUMAN Angiogenic factor with G patch and FHA domains 1 (Angiogenic factor
VG5Q) (Vasculogenesis gene on 5q) (hVG5Q)
Length = 714
Score = 57.8 bits (138), Expect = 4e-08
Identities = 40/115 (34%), Positives = 60/115 (52%)
Frame = +3
Query: 360 RKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKERREKFGIPSPPTKRKYESDLPEIP 539
RK ++++R K G+ N+ +K KY+DRA +RRE+ G S T ++ D P
Sbjct: 559 RKELKKIRVKYGL-QNTEYEDEKTLKNPKYKDRAGKRREQVG--SEGTFQR--DDAPASV 613
Query: 540 LPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIG 704
E+T K +M+EKMGW +G+GLGK G +Q + T AG+G
Sbjct: 614 HSEITD-------SNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLG 661
>sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FHA domains 1 (Angiogenic factor
VG5Q) (mVG5Q)
Length = 711
Score = 57.4 bits (137), Expect = 5e-08
Identities = 40/115 (34%), Positives = 60/115 (52%)
Frame = +3
Query: 360 RKNIEQLREKLGIPDNSASVMSVPMKAIKYRDRAKERREKFGIPSPPTKRKYESDLPEIP 539
RK ++++R K G+ N+ +K KY+DRA +RRE+ G S T ++ D P
Sbjct: 556 RKALKKIRVKYGL-QNTDYEAEKALKNPKYKDRAGKRREQVG--SEGTFQR--DDAPASV 610
Query: 540 LPEVTTVPSVAQPEVKVSRMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIG 704
E+T K +M+EKMGW +G+GLGK G +Q + T AG+G
Sbjct: 611 HSEITD-------SNKGRKMLEKMGWKRGEGLGKDGGGMKTPIQLQLRRTHAGLG 658
>sp|Q9NW75|GPTC2_HUMAN G patch domain containing protein 2
Length = 528
Score = 46.2 bits (108), Expect = 1e-04
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Frame = +3
Query: 537 PLPEVTTVPSV---AQPEVKVS---RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAG 698
PLP TT V AQP ++ + RM++ MGWT G GLG+ +G +E +QA G G
Sbjct: 448 PLPGPTTAGFVGENAQPILENNIGNRMLQNMGWTPGSGLGRDGKGISEPIQAMQRPKGLG 507
Query: 699 IG-AAPKFNSA 728
+G PK SA
Sbjct: 508 LGFPLPKSTSA 518
>sp|Q96BK5|PINX1_HUMAN Pin2-interacting protein X1 (TRF1-interacting protein 1)
(Liver-related putative tumor suppressor) (67-11-3
protein)
Length = 328
Score = 43.5 bits (101), Expect = 8e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 594 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA 707
RM+EKMGW++G+GLG QG T+ ++ + G+GA
Sbjct: 32 RMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGA 69
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplast precursor
Length = 387
Score = 43.1 bits (100), Expect = 0.001
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3
Query: 594 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGI 701
RMM KMGW QGQGLGKS QG T + A+ AG+
Sbjct: 220 RMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGV 255
>sp|Q9CZX5|PINX1_MOUSE Pin2-interacting protein X1 (TRF1-interacting protein 1)
(Liver-related putative tumor suppressor) (LPTS1)
(67-11-3 protein)
Length = 332
Score = 43.1 bits (100), Expect = 0.001
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 594 RMMEKMGWTQGQGLGKSNQGRTEIVQAEFHTTGAGIGA 707
+M+EKMGW++G+GLG QG TE ++ + G+GA
Sbjct: 32 KMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNHLGLGA 69
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,852,963
Number of Sequences: 369166
Number of extensions: 1980368
Number of successful extensions: 6897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6856
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)