Planaria EST Database

DrC_00329

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00329
         (1061 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55814|OAZ_XENLA  Ornithine decarboxylase antizyme (ODC-Az)     38   0.043
sp|O42148|OAZ_CHICK  Ornithine decarboxylase antizyme (ODC-Az)     37   0.12 
sp|Q9NHZ5|OAZ_ONCVO  Ornithine decarboxylase antizyme (ODC-Az)     35   0.28 
sp|P54368|OAZ1_HUMAN  Ornithine decarboxylase antizyme (ODC-Az)    35   0.36 
sp|P54370|OAZ1_RAT  Ornithine decarboxylase antizyme (ODC-Az)      34   0.62 
sp|P70112|OAZ1_MESAU  Ornithine decarboxylase antizyme (ODC-Az)    34   0.62 
sp|P54369|OAZ1_MOUSE  Ornithine decarboxylase antizyme (ODC-Az)    34   0.62 
sp|Q9UMX2|OAZ3_HUMAN  Ornithine decarboxylase antizyme 3 (OD...    33   1.4  
sp|Q9USQ5|OAZ_SCHPO  Ornithine decarboxylase antizyme (ODC-Az)     32   2.3  
sp|P70617|NINJ1_RAT  Ninjurin-1 (Nerve injury-induced protei...    32   3.1  

>sp|P55814|OAZ_XENLA Ornithine decarboxylase antizyme (ODC-Az)
          Length = 216

 Score = 38.1 bits (87), Expect = 0.043
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +3

Query: 552 EMKWDYIIVEDIMLFSLPESAHKQKGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESC 731
           ++ W  ++  + +   +P S     G +D F   LE+AE+++      +   K+    + 
Sbjct: 117 QVSWRAVLNNNNLYIEIP-SGTLPDGSKDSFAILLEYAEEQLQVDHVFICFHKNRDDRAM 175

Query: 732 QISTFRFLGFALMSP 776
            + TFRFLGF ++ P
Sbjct: 176 LLRTFRFLGFEIVIP 190

>sp|O42148|OAZ_CHICK Ornithine decarboxylase antizyme (ODC-Az)
          Length = 216

 Score = 36.6 bits (83), Expect = 0.12
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +3

Query: 555 MKWDYIIVEDIMLFSLPESAHKQKGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQ 734
           + W  ++  + +   +P  A  + G +D F   LE AE+++      +   K+    +  
Sbjct: 118 ISWRAVLNNNNLYIEIPSGALPE-GSKDSFAVLLEFAEEQLQVDHVFICFHKNRDDRAAL 176

Query: 735 ISTFRFLGFALMSP 776
           + TF FLGF ++ P
Sbjct: 177 LRTFSFLGFEIVRP 190

>sp|Q9NHZ5|OAZ_ONCVO Ornithine decarboxylase antizyme (ODC-Az)
          Length = 145

 Score = 35.4 bits (80), Expect = 0.28
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 633 RDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQISTFRFLGFALMSPDTVPECL 797
           +  FV  LE  ED +     +L ++K   V+   +S F++LGF+ + P   P C+
Sbjct: 80  KGAFVSLLEFCEDNLPIKRILLCLNKIN-VDETVVSCFKYLGFSPLHPHLYPSCI 133

>sp|P54368|OAZ1_HUMAN Ornithine decarboxylase antizyme (ODC-Az)
          Length = 228

 Score = 35.0 bits (79), Expect = 0.36
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 555 MKWDYIIVEDIMLFSLPESAHKQKGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQ 734
           + W  ++    +   +P  A  + G +D F   LE AE+++      +   K+    +  
Sbjct: 128 INWRTVLSGGSLYIEIPGGALPE-GSKDSFAVLLEFAEEQLRADHVFICFHKNREDRAAL 186

Query: 735 ISTFRFLGFALMSP 776
           + TF FLGF ++ P
Sbjct: 187 LRTFSFLGFEIVRP 200

>sp|P54370|OAZ1_RAT Ornithine decarboxylase antizyme (ODC-Az)
          Length = 227

 Score = 34.3 bits (77), Expect = 0.62
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 624 KGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQISTFRFLGFALMSP 776
           +G +D F   LE AE+++      +   K+    +  + TF FLGF ++ P
Sbjct: 150 EGSKDSFAALLEFAEEQLRADHVFICFPKNREDRAALLRTFSFLGFEIVRP 200

>sp|P70112|OAZ1_MESAU Ornithine decarboxylase antizyme (ODC-Az)
          Length = 222

 Score = 34.3 bits (77), Expect = 0.62
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 624 KGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQISTFRFLGFALMSP 776
           +G +D F   LE AE+++      +   K+    +  + TF FLGF ++ P
Sbjct: 150 EGSKDSFAALLEFAEEQLQADHVFICFPKNREDRAALLRTFSFLGFEIVRP 200

>sp|P54369|OAZ1_MOUSE Ornithine decarboxylase antizyme (ODC-Az)
          Length = 227

 Score = 34.3 bits (77), Expect = 0.62
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 624 KGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQISTFRFLGFALMSP 776
           +G +D F   LE AE+++      +   K+    +  + TF FLGF ++ P
Sbjct: 150 EGSKDSFAALLEFAEEQLQADHVFICFPKNREDRAALLRTFSFLGFEIVRP 200

>sp|Q9UMX2|OAZ3_HUMAN Ornithine decarboxylase antizyme 3 (ODC-Az 3) (AZ3)
          Length = 187

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 17/77 (22%), Positives = 32/77 (41%)
 Frame = +3

Query: 549 TEMKWDYIIVEDIMLFSLPESAHKQKGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVES 728
           T   W  ++ +  +   +P  A  Q G R+     LE+ E++ N     +    D     
Sbjct: 83  TSAHWHGLLCDRRLFLDIPYQALDQ-GNRESLTATLEYVEEKTNVDSVFVNFQNDRNDRG 141

Query: 729 CQISTFRFLGFALMSPD 779
             +  F ++GF ++ PD
Sbjct: 142 ALLRAFSYMGFEVVRPD 158

>sp|Q9USQ5|OAZ_SCHPO Ornithine decarboxylase antizyme (ODC-Az)
          Length = 226

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +3

Query: 591 LFSLPESAHKQKGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQISTFRFLGF 761
           LF +PES  +    ++G V  ++ A D ++CS  VL +DK+       + +  ++GF
Sbjct: 153 LFLIPES-WEDVHLKEGLVAIIDLAVDRLHCSKLVLFVDKNNSSLPYLVKSLHWVGF 208

>sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protein 1)
          Length = 152

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
 Frame = +1

Query: 157 SPGPPSATLC*QRAAVWGLSKSPLSQLILL*KPRIHFLIAIVAIISHQKLKVIEIVNLVK 336
           SPG P A+        WGL   P++                   ++H   K     +++ 
Sbjct: 18  SPGSPDAS-----PPRWGLRNRPIN-------------------VNHYANKKSAAESMLD 53

Query: 337 LVLIVMSV*QLQIVVLSGNRIS--IPMMII*TVSLIMTIPSRMLLKMMPSCSIQYP 498
           + L++ +  QL+ VV  GN  +  +P++++ ++SL++ I   +LL  +    +  P
Sbjct: 54  IALLMANASQLKAVVEQGNEFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNP 109

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,148,108
Number of Sequences: 369166
Number of extensions: 2227335
Number of successful extensions: 4759
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4754
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 11487183060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00329

  1. Dr_sW_027_F09
  2. Dr_sW_025_H02
  3. Dr_sW_028_I21
  4. Dr_sW_008_L07
  5. Dr_sW_008_E14
  6. Dr_sW_025_O18
  7. Dr_sW_022_G08
  8. Dr_sW_024_A12
  9. Dr_sW_021_J21
  10. Dr_sW_028_O22
  11. Dr_sW_007_B11
  12. Dr_sW_018_N15
  13. Dr_sW_012_N11
  14. Dr_sW_018_A11
  15. Dr_sW_013_N24
  16. Dr_sW_027_O20
  17. Dr_sW_007_L22
  18. Dr_sW_020_B18
  19. Dr_sW_005_A01
  20. Dr_sW_003_B11
  21. Dr_sW_001_A03