Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_G08
(829 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protei... 32 2.1
sp|Q07540|FRDA_YEAST Frataxin homolog, mitochondrial precur... 31 3.6
sp|Q10432|YQ37_SCHPO Hypothetical protein C188.07 in chromo... 31 4.8
sp|O70131|NINJ1_MOUSE Ninjurin-1 (Nerve injury-induced prot... 30 6.2
>sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protein 1)
Length = 152
Score = 32.0 bits (71), Expect = 2.1
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +1
Query: 109 SPGPPSATLC*QRAAVWGLSKSPLSQLILL*KPRIHFLIAIVAIISHQKLKVIEIVNLVK 288
SPG P A+ WGL P++ ++H K +++
Sbjct: 18 SPGSPDAS-----PPRWGLRNRPIN-------------------VNHYANKKSAAESMLD 53
Query: 289 LVLIVMSV*QLQIVVLSGNRIS--IPMMII*TVSLIMTIPSRMLLKMMPSCSIQYP 450
+ L++ + QL+ VV GN + +P++++ ++SL++ I +LL + + P
Sbjct: 54 IALLMANASQLKAVVEQGNEFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNP 109
>sp|Q07540|FRDA_YEAST Frataxin homolog, mitochondrial precursor [Contains: Frataxin
homolog intermediate form]
Length = 174
Score = 31.2 bits (69), Expect = 3.6
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = +3
Query: 273 RQFSKASTDSD----ECLTTPDSSFVRESYFNSNDDYLDRFINNDDSKSNAFEN---DAE 431
++F ++STD E L P E Y DDYLD +++ + S A + D E
Sbjct: 49 KRFVESSTDGQVVPQEVLNLP-----LEKYHEEADDYLDHLLDSLEELSEAHPDCIPDVE 103
Query: 432 LQYSVPHPVNAISHTFVSDKSMPTEMKW 515
L + V T+V +K P + W
Sbjct: 104 LSHGVMTLEIPAFGTYVINKQPPNKQIW 131
>sp|Q10432|YQ37_SCHPO Hypothetical protein C188.07 in chromosome III
Length = 735
Score = 30.8 bits (68), Expect = 4.8
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -3
Query: 773 IKSSHKFFKHSGTESGDINANPRKRNVRYLTTLDSSIFINS*HST*AIHFIFSMFKKLNK 594
I+S+H KH ++ + +LD+S F + ++ F+ +FK L+
Sbjct: 179 IQSAHNIAKHPSLYDTEVRNPSAAESTNSHVSLDASNFSSYAENSSKFLFLQELFKNLSP 238
Query: 593 SISKSFLL 570
S SK+F L
Sbjct: 239 SYSKTFFL 246
>sp|O70131|NINJ1_MOUSE Ninjurin-1 (Nerve injury-induced protein 1)
Length = 152
Score = 30.4 bits (67), Expect = 6.2
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = +1
Query: 109 SPGPPSATLC*QRAAVWGLSKSPLSQLILL*KPRIHFLIAIVAIISHQKLKVIEIVNLVK 288
SPG P A WGL P++ ++H K +++
Sbjct: 18 SPGSPDAL-----PPRWGLRNRPIN-------------------VNHYANKKSAAESMLD 53
Query: 289 LVLIVMSV*QLQIVVLSGNRIS--IPMMII*TVSLIMTIPSRMLLKMMPSCSIQYP 450
+ L++ + QL+ VV GN + +P++++ ++SL++ I +LL + + P
Sbjct: 54 IALLMANASQLKAVVEQGNDFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNP 109
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,632,766
Number of Sequences: 369166
Number of extensions: 1885385
Number of successful extensions: 4407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4403
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)