Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_H02
(537 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protei... 32 0.99
sp|Q07540|FRDA_YEAST Frataxin homolog, mitochondrial precur... 31 1.7
sp|O70131|NINJ1_MOUSE Ninjurin-1 (Nerve injury-induced prot... 30 2.9
sp|P67569|SYR_MYCTU Arginyl-tRNA synthetase (Arginine--tRNA... 30 4.9
sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1 29 6.4
sp|P24892|NU4M_CAEEL NADH-ubiquinone oxidoreductase chain 4... 29 6.4
sp|P53125|ITC1_YEAST Imitation switch two complex protein 1 29 8.3
>sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protein 1)
Length = 152
Score = 32.0 bits (71), Expect = 0.99
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +2
Query: 92 SPGPPSATLC*QRAAVWGLSKSPLSQLILL*KPRIHFLIAIVAIISHQKLKVIEIVNLVK 271
SPG P A+ WGL P++ ++H K +++
Sbjct: 18 SPGSPDAS-----PPRWGLRNRPIN-------------------VNHYANKKSAAESMLD 53
Query: 272 LVLIVMSV*QLQIVVLSGNRIS--IPMMII*TVSLIMTIPSRMLLKMMPSCSIQYP 433
+ L++ + QL+ VV GN + +P++++ ++SL++ I +LL + + P
Sbjct: 54 IALLMANASQLKAVVEQGNEFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNP 109
>sp|Q07540|FRDA_YEAST Frataxin homolog, mitochondrial precursor [Contains: Frataxin
homolog intermediate form]
Length = 174
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = +1
Query: 256 RQFSKASTDSD----ECLTTPDSSFVRESYFNSNDDYLDRFINNDDSKSNAFEN---DAE 414
++F ++STD E L P E Y DDYLD +++ + S A + D E
Sbjct: 49 KRFVESSTDGQVVPQEVLNLP-----LEKYHEEADDYLDHLLDSLEELSEAHPDCIPDVE 103
Query: 415 LQYSVPHPVNAISHTFVSDKSMPTEMKW 498
L + V T+V +K P + W
Sbjct: 104 LSHGVMTLEIPAFGTYVINKQPPNKQIW 131
>sp|O70131|NINJ1_MOUSE Ninjurin-1 (Nerve injury-induced protein 1)
Length = 152
Score = 30.4 bits (67), Expect = 2.9
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = +2
Query: 92 SPGPPSATLC*QRAAVWGLSKSPLSQLILL*KPRIHFLIAIVAIISHQKLKVIEIVNLVK 271
SPG P A WGL P++ ++H K +++
Sbjct: 18 SPGSPDAL-----PPRWGLRNRPIN-------------------VNHYANKKSAAESMLD 53
Query: 272 LVLIVMSV*QLQIVVLSGNRIS--IPMMII*TVSLIMTIPSRMLLKMMPSCSIQYP 433
+ L++ + QL+ VV GN + +P++++ ++SL++ I +LL + + P
Sbjct: 54 IALLMANASQLKAVVEQGNDFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNP 109
>sp|P67569|SYR_MYCTU Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
sp|P67570|SYR_MYCBO Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
Length = 550
Score = 29.6 bits (65), Expect = 4.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 295 LTTPDSSFVRESYFNSNDDYLDRFINN 375
LTT + VRE YFN + +DRF N+
Sbjct: 154 LTTQGADVVREYYFNDHGAQIDRFANS 180
>sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1
Length = 1956
Score = 29.3 bits (64), Expect = 6.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 310 SSFVRESYFNSNDDYLDRFINNDDSKSNAFEND 408
S V+ +Y N+NDD D NNDD ++ ND
Sbjct: 894 SVIVKSTYGNNNDDNNDDDNNNDDDNNDDNNND 926
>sp|P24892|NU4M_CAEEL NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 409
Score = 29.3 bits (64), Expect = 6.4
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +2
Query: 272 LVLIVMSV*QLQIVVLS--GNRISIPMMII*TVSLIMTIPSRMLLKMMPSCSIQYPIPLM 445
++LIVMS+ L I+V+S N + I I+ + +I IPS M++ M +PI +M
Sbjct: 48 ILLIVMSLFILGIIVISEKNNNLLILSEILVFICIIFFIPSNMMMLYMFFELSMFPILVM 107
Query: 446 PL 451
L
Sbjct: 108 IL 109
>sp|P53125|ITC1_YEAST Imitation switch two complex protein 1
Length = 1264
Score = 28.9 bits (63), Expect = 8.3
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Frame = +1
Query: 235 KVESNRNRQFSKASTDSDECLTTPD----SSFVRESYFNSNDDYLDRFINNDDSKS---- 390
++E+N +KA T ++E P +SF+R+ N D ++ I +DD S
Sbjct: 483 EIENNGLPMKNKAETTTEEDSENPSDWQRNSFIRDMIMKRNSDKVEYKIVHDDPASDDIL 542
Query: 391 -NAFENDAELQYSVPHPVNAISHTFVSDKSMPTEMKWDYIIVED 519
N N + L V A+ F+++ E W I+VE+
Sbjct: 543 DNINHNGSALLIEV---FTALLRLFINE-----EGDWSCIVVEN 578
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,584,495
Number of Sequences: 369166
Number of extensions: 1058126
Number of successful extensions: 2596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2592
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)