Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_N11
(861 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55814|OAZ_XENLA Ornithine decarboxylase antizyme (ODC-Az) 38 0.032
sp|O42148|OAZ_CHICK Ornithine decarboxylase antizyme (ODC-Az) 37 0.092
sp|P54368|OAZ1_HUMAN Ornithine decarboxylase antizyme (ODC-Az) 35 0.27
sp|Q9NHZ5|OAZ_ONCVO Ornithine decarboxylase antizyme (ODC-Az) 35 0.27
sp|P54370|OAZ1_RAT Ornithine decarboxylase antizyme (ODC-Az) 34 0.46
sp|P70112|OAZ1_MESAU Ornithine decarboxylase antizyme (ODC-Az) 34 0.46
sp|P54369|OAZ1_MOUSE Ornithine decarboxylase antizyme (ODC-Az) 34 0.46
sp|Q9UMX2|OAZ3_HUMAN Ornithine decarboxylase antizyme 3 (OD... 33 1.0
sp|Q9USQ5|OAZ_SCHPO Ornithine decarboxylase antizyme (ODC-Az) 32 1.7
sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protei... 32 2.3
>sp|P55814|OAZ_XENLA Ornithine decarboxylase antizyme (ODC-Az)
Length = 216
Score = 38.1 bits (87), Expect = 0.032
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +1
Query: 460 EMKWDYIIVEDIMLFSLPESAHKQKGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESC 639
++ W ++ + + +P S G +D F LE+AE+++ + K+ +
Sbjct: 117 QVSWRAVLNNNNLYIEIP-SGTLPDGSKDSFAILLEYAEEQLQVDHVFICFHKNRDDRAM 175
Query: 640 QISTFRFLGFALMSP 684
+ TFRFLGF ++ P
Sbjct: 176 LLRTFRFLGFEIVIP 190
>sp|O42148|OAZ_CHICK Ornithine decarboxylase antizyme (ODC-Az)
Length = 216
Score = 36.6 bits (83), Expect = 0.092
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = +1
Query: 463 MKWDYIIVEDIMLFSLPESAHKQKGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQ 642
+ W ++ + + +P A + G +D F LE AE+++ + K+ +
Sbjct: 118 ISWRAVLNNNNLYIEIPSGALPE-GSKDSFAVLLEFAEEQLQVDHVFICFHKNRDDRAAL 176
Query: 643 ISTFRFLGFALMSP 684
+ TF FLGF ++ P
Sbjct: 177 LRTFSFLGFEIVRP 190
>sp|P54368|OAZ1_HUMAN Ornithine decarboxylase antizyme (ODC-Az)
Length = 228
Score = 35.0 bits (79), Expect = 0.27
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 463 MKWDYIIVEDIMLFSLPESAHKQKGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQ 642
+ W ++ + +P A + G +D F LE AE+++ + K+ +
Sbjct: 128 INWRTVLSGGSLYIEIPGGALPE-GSKDSFAVLLEFAEEQLRADHVFICFHKNREDRAAL 186
Query: 643 ISTFRFLGFALMSP 684
+ TF FLGF ++ P
Sbjct: 187 LRTFSFLGFEIVRP 200
>sp|Q9NHZ5|OAZ_ONCVO Ornithine decarboxylase antizyme (ODC-Az)
Length = 145
Score = 35.0 bits (79), Expect = 0.27
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 541 RDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQISTFRFLGFALMSPDSVPECL 705
+ FV LE ED + +L ++K V+ +S F++LGF+ + P P C+
Sbjct: 80 KGAFVSLLEFCEDNLPIKRILLCLNKIN-VDETVVSCFKYLGFSPLHPHLYPSCI 133
>sp|P54370|OAZ1_RAT Ornithine decarboxylase antizyme (ODC-Az)
Length = 227
Score = 34.3 bits (77), Expect = 0.46
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 532 KGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQISTFRFLGFALMSP 684
+G +D F LE AE+++ + K+ + + TF FLGF ++ P
Sbjct: 150 EGSKDSFAALLEFAEEQLRADHVFICFPKNREDRAALLRTFSFLGFEIVRP 200
>sp|P70112|OAZ1_MESAU Ornithine decarboxylase antizyme (ODC-Az)
Length = 222
Score = 34.3 bits (77), Expect = 0.46
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 532 KGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQISTFRFLGFALMSP 684
+G +D F LE AE+++ + K+ + + TF FLGF ++ P
Sbjct: 150 EGSKDSFAALLEFAEEQLQADHVFICFPKNREDRAALLRTFSFLGFEIVRP 200
>sp|P54369|OAZ1_MOUSE Ornithine decarboxylase antizyme (ODC-Az)
Length = 227
Score = 34.3 bits (77), Expect = 0.46
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 532 KGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQISTFRFLGFALMSP 684
+G +D F LE AE+++ + K+ + + TF FLGF ++ P
Sbjct: 150 EGSKDSFAALLEFAEEQLQADHVFICFPKNREDRAALLRTFSFLGFEIVRP 200
>sp|Q9UMX2|OAZ3_HUMAN Ornithine decarboxylase antizyme 3 (ODC-Az 3) (AZ3)
Length = 187
Score = 33.1 bits (74), Expect = 1.0
Identities = 17/77 (22%), Positives = 32/77 (41%)
Frame = +1
Query: 457 TEMKWDYIIVEDIMLFSLPESAHKQKGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVES 636
T W ++ + + +P A Q G R+ LE+ E++ N + D
Sbjct: 83 TSAHWHGLLCDRRLFLDIPYQALDQ-GNRESLTATLEYVEEKTNVDSVFVNFQNDRNDRG 141
Query: 637 CQISTFRFLGFALMSPD 687
+ F ++GF ++ PD
Sbjct: 142 ALLRAFSYMGFEVVRPD 158
>sp|Q9USQ5|OAZ_SCHPO Ornithine decarboxylase antizyme (ODC-Az)
Length = 226
Score = 32.3 bits (72), Expect = 1.7
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 499 LFSLPESAHKQKGFRDGFVQFLEHAEDEMNCSCAVLAIDKDGGVESCQISTFRFLGF 669
LF +PES + ++G V ++ A D ++CS VL +DK+ + + ++GF
Sbjct: 153 LFLIPES-WEDVHLKEGLVAIIDLAVDRLHCSKLVLFVDKNNSSLPYLVKSLHWVGF 208
>sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protein 1)
Length = 152
Score = 32.0 bits (71), Expect = 2.3
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +2
Query: 65 SPGPPSATLC*QRAAVWGLSKSPLSQLILL*KPRIHFLIAIVAIISHQELKVIEIVNLVK 244
SPG P A+ WGL P++ ++H K +++
Sbjct: 18 SPGSPDAS-----PPRWGLRNRPIN-------------------VNHYANKKSAAESMLD 53
Query: 245 LVLIVMSV*QLQIVVLSGNRIS--IPMMII*TVSLIMTIPSRMLLKMMPSCSIQYP 406
+ L++ + QL+ VV GN + +P++++ ++SL++ I +LL + + P
Sbjct: 54 IALLMANASQLKAVVEQGNEFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNP 109
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,165,229
Number of Sequences: 369166
Number of extensions: 1861112
Number of successful extensions: 4161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4157
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)