Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_F09
(359 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protei... 30 1.7
sp|P67569|SYR_MYCTU Arginyl-tRNA synthetase (Arginine--tRNA... 30 2.2
sp|O70131|NINJ1_MOUSE Ninjurin-1 (Nerve injury-induced prot... 28 4.9
sp|P45840|SYR_MYCLE Arginyl-tRNA synthetase (Arginine--tRNA... 28 4.9
sp|Q7RTU9|STRC_HUMAN Stereocilin precursor 28 6.4
sp|Q9X5M0|SYR_MYCSM Arginyl-tRNA synthetase (Arginine--tRNA... 28 6.4
sp|P09243|TBA2_STYLE Tubulin alpha-2 chain 28 8.4
sp|Q7Z4F1|LRP10_HUMAN Low-density lipoprotein receptor-rela... 28 8.4
>sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protein 1)
Length = 152
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +2
Query: 62 SPGPPSATLC*QRAAVWGLSKSPLSQLILL*KPRIHFLIAIVAIISHQKLKVIEIVNLVK 241
SPG P A+ WGL P++ ++H K +++
Sbjct: 18 SPGSPDAS-----PPRWGLRNRPIN-------------------VNHYANKKSAAESMLD 53
Query: 242 LVLIVMSV*QLQIVVLSGNRIS--IPMMII*TVSLIMTI 352
+ L++ + QL+ VV GN + +P++++ ++SL++ I
Sbjct: 54 IALLMANASQLKAVVEQGNEFAFFVPLVVLISISLVLQI 92
>sp|P67569|SYR_MYCTU Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
sp|P67570|SYR_MYCBO Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
Length = 550
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 265 LTTPDSSFVRESYFNSNDDYLDRFINN 345
LTT + VRE YFN + +DRF N+
Sbjct: 154 LTTQGADVVREYYFNDHGAQIDRFANS 180
>sp|O70131|NINJ1_MOUSE Ninjurin-1 (Nerve injury-induced protein 1)
Length = 152
Score = 28.5 bits (62), Expect = 4.9
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +2
Query: 62 SPGPPSATLC*QRAAVWGLSKSPLSQLILL*KPRIHFLIAIVAIISHQKLKVIEIVNLVK 241
SPG P A WGL P++ ++H K +++
Sbjct: 18 SPGSPDAL-----PPRWGLRNRPIN-------------------VNHYANKKSAAESMLD 53
Query: 242 LVLIVMSV*QLQIVVLSGNRIS--IPMMII*TVSLIMTI 352
+ L++ + QL+ VV GN + +P++++ ++SL++ I
Sbjct: 54 IALLMANASQLKAVVEQGNDFAFFVPLVVLISISLVLQI 92
>sp|P45840|SYR_MYCLE Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
Length = 550
Score = 28.5 bits (62), Expect = 4.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 265 LTTPDSSFVRESYFNSNDDYLDRFINN 345
L+T ++ VRE YFN + +DRF N+
Sbjct: 154 LSTQGAAVVREYYFNDHGAQIDRFTNS 180
>sp|Q7RTU9|STRC_HUMAN Stereocilin precursor
Length = 1775
Score = 28.1 bits (61), Expect = 6.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 86 KLPTAVRGSSNAALWPRIQR 27
+LPT VRGS A +W +QR
Sbjct: 1218 QLPTRVRGSLRACIWAELQR 1237
>sp|Q9X5M0|SYR_MYCSM Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
Length = 550
Score = 28.1 bits (61), Expect = 6.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 265 LTTPDSSFVRESYFNSNDDYLDRFINN 345
L T ++ RE YFN + +DRF+N+
Sbjct: 154 LATQGAAVTREYYFNDHGAQIDRFVNS 180
>sp|P09243|TBA2_STYLE Tubulin alpha-2 chain
Length = 449
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Frame = +2
Query: 158 PRIHFLIAIVAIIS-----HQKLKVIEIVN 232
PRIHF+++ +IS H++L V EI N
Sbjct: 263 PRIHFMLSSAPVISAEKAYHEQLSVAEITN 292
>sp|Q7Z4F1|LRP10_HUMAN Low-density lipoprotein receptor-related protein 10 precursor
Length = 713
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 17 QFLHVGCGAKALHLMSPGPPSATLC 91
Q LH+ CG++ L L SP P +LC
Sbjct: 74 QKLHLACGSERLTLRSPLQPLISLC 98
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.311 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,013,735
Number of Sequences: 369166
Number of extensions: 643577
Number of successful extensions: 1170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)