Planaria EST Database

DrC_00325

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00325
         (970 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62332|ARF6_RAT  ADP-ribosylation factor 6 >gi|59799156|s...   295   1e-79
sp|P26990|ARF6_CHICK  ADP-ribosylation factor 6                   294   3e-79
sp|P51645|ARF6_XENLA  ADP-ribosylation factor 6                   291   1e-78
sp|P40946|ARF3_DROME  ADP-ribosylation factor 3                   290   4e-78
sp|P36397|ARF1_ARATH  ADP-ribosylation factor 1                   249   6e-66
sp|Q9Y7Z2|ARF2_SCHPO  Probable ADP-ribosylation factor            248   2e-65
sp|P49076|ARF_MAIZE  ADP-ribosylation factor                      247   3e-65
sp|Q9SRC3|ARF2_ARATH  ADP-ribosylation factor 1-like              247   3e-65
sp|P91924|ARF_DUGJA  ADP-ribosylation factor                      247   3e-65
sp|P51823|ARF_ORYSA  ADP-ribosylation factor                      246   5e-65

>sp|P62332|ARF6_RAT ADP-ribosylation factor 6
 sp|P62331|ARF6_MOUSE ADP-ribosylation factor 6
 sp|P62330|ARF6_HUMAN ADP-ribosylation factor 6
          Length = 175

 Score =  295 bits (755), Expect = 1e-79
 Identities = 139/173 (80%), Positives = 160/173 (92%)
 Frame = +3

Query: 60  MGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFN 239
           MGK+ SK+ G KEMRILMLGLD AGKTTILYKLKLG +VTTIPTVGFNVETV+YKN+KFN
Sbjct: 1   MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60

Query: 240 VWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVF 419
           VWDVGGQ+KIRPLWRHYYTGTQGLIFV+D AD  R+DEAR+ELHRIINDREMR+A++L+F
Sbjct: 61  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120

Query: 420 ANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
           ANKQDL +A++P+EIQE+LGLTR+   R WYVQP+CATSGDGLYEGLTWLTS+
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCATSGDGLYEGLTWLTSN 172

>sp|P26990|ARF6_CHICK ADP-ribosylation factor 6
          Length = 175

 Score =  294 bits (752), Expect = 3e-79
 Identities = 138/173 (79%), Positives = 160/173 (92%)
 Frame = +3

Query: 60  MGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFN 239
           MGK+ SK+ G KEMRILMLGLD AGKTTILYKLKLG +VTTIPTVGFNVETV+YKN+KFN
Sbjct: 1   MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60

Query: 240 VWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVF 419
           VWDVGGQ+KIRPLWRHYYTGTQGLIFV+D AD  R+DEAR+ELHRIINDREMR+A++L+F
Sbjct: 61  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120

Query: 420 ANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
           ANKQDL +A++P+EIQE+LGLTR+   R WYVQP+CAT+GDGLYEGLTWLTS+
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCATTGDGLYEGLTWLTSN 172

>sp|P51645|ARF6_XENLA ADP-ribosylation factor 6
          Length = 175

 Score =  291 bits (746), Expect = 1e-78
 Identities = 137/173 (79%), Positives = 158/173 (91%)
 Frame = +3

Query: 60  MGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFN 239
           MGK+FSK+ G KEMRILM GLD AGKTTILYKLKLG +VTTIPTVGFNVETV+YKN+KFN
Sbjct: 1   MGKMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60

Query: 240 VWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVF 419
           VWDVGGQ+KIRPLWRHYYTGTQGLIFV+D  D  R+DEAR+ELHRIINDREMR+A++L+F
Sbjct: 61  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIF 120

Query: 420 ANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
           ANKQDL +A++P+EIQE+LGLTR+   R WYVQP+CA SGDGLYEGLTWLTS+
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCAASGDGLYEGLTWLTSN 172

>sp|P40946|ARF3_DROME ADP-ribosylation factor 3
          Length = 175

 Score =  290 bits (742), Expect = 4e-78
 Identities = 140/176 (79%), Positives = 159/176 (90%), Gaps = 1/176 (0%)
 Frame = +3

Query: 60  MGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFN 239
           MGKL SK+ G KEMRILMLGLD AGKTTILYKLKLG +VTTIPTVGFNVETV+YKN+KFN
Sbjct: 1   MGKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60

Query: 240 VWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVF 419
           VWDVGGQ+KIRPLWRHYYTGTQGLIFV+D AD  R+DEAR ELHRIINDREMR+A++L+F
Sbjct: 61  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIF 120

Query: 420 ANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTS-HKI 584
           ANKQDL +A++P+EIQE+LGLTR+   R WYVQP+CATSGDGL EGL WLTS HK+
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCATSGDGLSEGLIWLTSNHKL 175

>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1
          Length = 181

 Score =  249 bits (637), Expect = 6e-66
 Identities = 121/175 (69%), Positives = 143/175 (81%)
 Frame = +3

Query: 54  IEMGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIK 233
           +  GKLFS+L  KKEMRILM+GLD AGKTTILYKLKLG  VTTIPT+GFNVETV YKNI 
Sbjct: 3   LSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62

Query: 234 FNVWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLL 413
           F VWDVGGQ+KIRPLWRHY+  TQGLIFV+DS D  R+ EAR+ELHR++N+ E+R+AVLL
Sbjct: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122

Query: 414 VFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
           VFANKQDL  A+   EI ++LGL  L   R WY+Q  CATSG+GLYEGL WL+++
Sbjct: 123 VFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLDWLSNN 176

>sp|Q9Y7Z2|ARF2_SCHPO Probable ADP-ribosylation factor
          Length = 184

 Score =  248 bits (633), Expect = 2e-65
 Identities = 122/171 (71%), Positives = 141/171 (82%)
 Frame = +3

Query: 66  KLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFNVW 245
           K FS+L   KEMRILMLGLD AGKTTILYKLKL  +V TIPTVGFNVETV+YKNIKFNVW
Sbjct: 11  KPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVW 70

Query: 246 DVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVFAN 425
           DVGGQ+KIRPLWRHY+TGT+GLIFV+DSAD  R+ EAR+ELHRII+DREMR+ +LLV AN
Sbjct: 71  DVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLAN 130

Query: 426 KQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
           KQDL  AL P +I + L L +L   R+W VQP CA +GDGL EGL WL+ +
Sbjct: 131 KQDLPGALSPAQITDVLQLDKLK-DRLWNVQPTCALTGDGLLEGLAWLSQN 180

>sp|P49076|ARF_MAIZE ADP-ribosylation factor
          Length = 181

 Score =  247 bits (631), Expect = 3e-65
 Identities = 120/171 (70%), Positives = 141/171 (82%)
 Frame = +3

Query: 66  KLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFNVW 245
           KLFS+L  KKEMRILM+GLD AGKTTILYKLKLG  VTTIPT+GFNVETV YKNI F VW
Sbjct: 7   KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66

Query: 246 DVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVFAN 425
           DVGGQ+KIRPLWRHY+  TQGLIFV+DS D  R+ EAR+ELHR++N+ E+R+AVLLVFAN
Sbjct: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126

Query: 426 KQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
           KQDL  A+   EI ++LGL  L   R WY+Q  CAT+G+GLYEGL WL+S+
Sbjct: 127 KQDLPNAMNAAEITDKLGLNSLR-QRHWYIQSTCATTGEGLYEGLDWLSSN 176

>sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like
          Length = 181

 Score =  247 bits (631), Expect = 3e-65
 Identities = 120/175 (68%), Positives = 142/175 (81%)
 Frame = +3

Query: 54  IEMGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIK 233
           +   KLFS+L  KKEMRILM+GLD AGKTTILYKLKLG  VTTIPT+GFNVETV YKNI 
Sbjct: 3   LSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62

Query: 234 FNVWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLL 413
           F VWDVGGQ+KIRPLWRHY+  TQGLIFV+DS D  R+ EAR+ELHR++N+ E+R+AVLL
Sbjct: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122

Query: 414 VFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
           VFANKQDL  A+   EI ++LGL  L   R WY+Q  CATSG+GLYEGL WL+++
Sbjct: 123 VFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLDWLSNN 176

>sp|P91924|ARF_DUGJA ADP-ribosylation factor
          Length = 183

 Score =  247 bits (631), Expect = 3e-65
 Identities = 120/169 (71%), Positives = 139/169 (82%)
 Frame = +3

Query: 69  LFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFNVWD 248
           L  +L GKKEMRILM+GLD AGKTTILYKLKLG  VTTIPT+GFNVETV YKNI F VWD
Sbjct: 8   LLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 67

Query: 249 VGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVFANK 428
           VGGQ+KIRPLWRHY+  TQGLIFV+DS D  R++EAREEL R++N+ E+R+AVLLVFANK
Sbjct: 68  VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANK 127

Query: 429 QDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTS 575
           QDL  A+ P EI ++LGL  L   R WY+Q  CATSGDGLYEGL WL++
Sbjct: 128 QDLPNAMNPAEITDKLGLHSLR-NRSWYIQATCATSGDGLYEGLDWLST 175

>sp|P51823|ARF_ORYSA ADP-ribosylation factor
          Length = 181

 Score =  246 bits (629), Expect = 5e-65
 Identities = 120/171 (70%), Positives = 141/171 (82%)
 Frame = +3

Query: 66  KLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFNVW 245
           KLFS+L  KKEMRILM+GLD AGKTTILYKLKLG  VTTIPT+GFNVETV YKNI F VW
Sbjct: 7   KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66

Query: 246 DVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVFAN 425
           DVGGQ+KIRPLWRHY+  TQGLIFV+DS D  R+ EAR+ELHR++N+ E+R+AVLLVFAN
Sbjct: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFAN 126

Query: 426 KQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
           KQDL  A+   EI ++LGL  L   R WY+Q  CATSG+GLYEGL WL+++
Sbjct: 127 KQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLDWLSNN 176

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,619,731
Number of Sequences: 369166
Number of extensions: 2349326
Number of successful extensions: 7480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7337
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10096222345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00325

  1. Dr_sW_008_J07
  2. Dr_sW_008_E11
  3. Dr_sW_020_N23
  4. Dr_sW_023_H14
  5. Dr_sW_019_A02
  6. Dr_sW_028_K22