Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_A02
(357 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62332|ARF6_RAT ADP-ribosylation factor 6 >gi|59799156|s... 94 1e-19
sp|P26990|ARF6_CHICK ADP-ribosylation factor 6 92 3e-19
sp|P51645|ARF6_XENLA ADP-ribosylation factor 6 92 5e-19
sp|P40946|ARF3_DROME ADP-ribosylation factor 3 89 4e-18
sp|P91924|ARF_DUGJA ADP-ribosylation factor 76 2e-14
sp|P34727|ARF_AJECA ADP-ribosylation factor 74 1e-13
sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1 74 1e-13
sp|P34728|ARF_CRYNE ADP-ribosylation factor 73 2e-13
sp|Q75A26|ARF_ASHGO ADP-ribosylation factor 73 2e-13
sp|P26991|ARF_GIALA ADP-ribosylation factor 73 2e-13
>sp|P62332|ARF6_RAT ADP-ribosylation factor 6
sp|P62331|ARF6_MOUSE ADP-ribosylation factor 6
sp|P62330|ARF6_HUMAN ADP-ribosylation factor 6
Length = 175
Score = 93.6 bits (231), Expect = 1e-19
Identities = 42/58 (72%), Positives = 53/58 (91%)
Frame = +3
Query: 3 VLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 176
++L+FANKQDL +A++P+EIQE+LGLTR+ R WYVQP+CATSGDGLYEGLTWLTS+
Sbjct: 116 IILIFANKQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATSGDGLYEGLTWLTSN 172
>sp|P26990|ARF6_CHICK ADP-ribosylation factor 6
Length = 175
Score = 92.4 bits (228), Expect = 3e-19
Identities = 41/58 (70%), Positives = 53/58 (91%)
Frame = +3
Query: 3 VLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 176
++L+FANKQDL +A++P+EIQE+LGLTR+ R WYVQP+CAT+GDGLYEGLTWLTS+
Sbjct: 116 IILIFANKQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATTGDGLYEGLTWLTSN 172
>sp|P51645|ARF6_XENLA ADP-ribosylation factor 6
Length = 175
Score = 91.7 bits (226), Expect = 5e-19
Identities = 41/58 (70%), Positives = 52/58 (89%)
Frame = +3
Query: 3 VLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 176
++L+FANKQDL +A++P+EIQE+LGLTR+ R WYVQP+CA SGDGLYEGLTWLTS+
Sbjct: 116 IILIFANKQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCAASGDGLYEGLTWLTSN 172
>sp|P40946|ARF3_DROME ADP-ribosylation factor 3
Length = 175
Score = 88.6 bits (218), Expect = 4e-18
Identities = 42/61 (68%), Positives = 53/61 (86%), Gaps = 1/61 (1%)
Frame = +3
Query: 3 VLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTS-HK 179
++L+FANKQDL +A++P+EIQE+LGLTR+ R WYVQP+CATSGDGL EGL WLTS HK
Sbjct: 116 IILIFANKQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATSGDGLSEGLIWLTSNHK 174
Query: 180 I 182
+
Sbjct: 175 L 175
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 76.3 bits (186), Expect = 2e-14
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +3
Query: 3 VLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTS 173
VLLVFANKQDL A+ P EI ++LGL L R WY+Q CATSGDGLYEGL WL++
Sbjct: 120 VLLVFANKQDLPNAMNPAEITDKLGLHSLRN-RSWYIQATCATSGDGLYEGLDWLST 175
>sp|P34727|ARF_AJECA ADP-ribosylation factor
Length = 183
Score = 73.6 bits (179), Expect = 1e-13
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = +3
Query: 3 VLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTS 173
+LLVFANKQDL A+ P EI ++LGL L+ R WY+Q CAT+GDGLYEGL WL +
Sbjct: 120 LLLVFANKQDLPNAMSPAEITQQLGLQSLTR-RAWYIQSTCATTGDGLYEGLEWLAN 175
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
Length = 181
Score = 73.6 bits (179), Expect = 1e-13
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = +3
Query: 3 VLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTS 173
VLLVFANKQDL +A+ E+ ++LGL L R WY+Q CATSGDGLYEGL WL++
Sbjct: 120 VLLVFANKQDLPQAMNAAEVTDKLGLHSLRN-RSWYIQATCATSGDGLYEGLDWLSN 175
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 73.2 bits (178), Expect = 2e-13
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +3
Query: 3 VLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 176
+LLVFANKQDL A+ EI ++LGL L R WY+Q ACATSGDGLYEGL WL+++
Sbjct: 120 LLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RSWYIQAACATSGDGLYEGLEWLSAN 176
>sp|Q75A26|ARF_ASHGO ADP-ribosylation factor
Length = 181
Score = 72.8 bits (177), Expect = 2e-13
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +3
Query: 3 VLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 176
VLLVFANKQDL EA+ EI E+LGL + R WY+Q CATSG+GLYEGL WL+++
Sbjct: 120 VLLVFANKQDLPEAMSAAEITEKLGLHSIRQ-RPWYIQATCATSGEGLYEGLEWLSTN 176
>sp|P26991|ARF_GIALA ADP-ribosylation factor
Length = 191
Score = 72.8 bits (177), Expect = 2e-13
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = +3
Query: 6 LLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 176
LLVFANKQDL +A+ ++ ERLGL L R WY+QP CA SGDGLY+GL WL+ +
Sbjct: 123 LLVFANKQDLPKAMSTTDLTERLGLQELKK-RDWYIQPTCARSGDGLYQGLDWLSDY 178
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,980,803
Number of Sequences: 369166
Number of extensions: 745222
Number of successful extensions: 1645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)