Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_J07
(744 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62332|ARF6_RAT ADP-ribosylation factor 6 >gi|59799156|s... 295 9e-80
sp|P26990|ARF6_CHICK ADP-ribosylation factor 6 294 2e-79
sp|P51645|ARF6_XENLA ADP-ribosylation factor 6 291 1e-78
sp|P40946|ARF3_DROME ADP-ribosylation factor 3 290 3e-78
sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 249 4e-66
sp|Q9Y7Z2|ARF2_SCHPO Probable ADP-ribosylation factor 248 1e-65
sp|P49076|ARF_MAIZE ADP-ribosylation factor 247 2e-65
sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like 247 2e-65
sp|P91924|ARF_DUGJA ADP-ribosylation factor 247 2e-65
sp|P51823|ARF_ORYSA ADP-ribosylation factor 246 4e-65
>sp|P62332|ARF6_RAT ADP-ribosylation factor 6
sp|P62331|ARF6_MOUSE ADP-ribosylation factor 6
sp|P62330|ARF6_HUMAN ADP-ribosylation factor 6
Length = 175
Score = 295 bits (755), Expect = 9e-80
Identities = 139/173 (80%), Positives = 160/173 (92%)
Frame = +3
Query: 60 MGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFN 239
MGK+ SK+ G KEMRILMLGLD AGKTTILYKLKLG +VTTIPTVGFNVETV+YKN+KFN
Sbjct: 1 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60
Query: 240 VWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVF 419
VWDVGGQ+KIRPLWRHYYTGTQGLIFV+D AD R+DEAR+ELHRIINDREMR+A++L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 420 ANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
ANKQDL +A++P+EIQE+LGLTR+ R WYVQP+CATSGDGLYEGLTWLTS+
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCATSGDGLYEGLTWLTSN 172
>sp|P26990|ARF6_CHICK ADP-ribosylation factor 6
Length = 175
Score = 294 bits (752), Expect = 2e-79
Identities = 138/173 (79%), Positives = 160/173 (92%)
Frame = +3
Query: 60 MGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFN 239
MGK+ SK+ G KEMRILMLGLD AGKTTILYKLKLG +VTTIPTVGFNVETV+YKN+KFN
Sbjct: 1 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60
Query: 240 VWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVF 419
VWDVGGQ+KIRPLWRHYYTGTQGLIFV+D AD R+DEAR+ELHRIINDREMR+A++L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 420 ANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
ANKQDL +A++P+EIQE+LGLTR+ R WYVQP+CAT+GDGLYEGLTWLTS+
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCATTGDGLYEGLTWLTSN 172
>sp|P51645|ARF6_XENLA ADP-ribosylation factor 6
Length = 175
Score = 291 bits (746), Expect = 1e-78
Identities = 137/173 (79%), Positives = 158/173 (91%)
Frame = +3
Query: 60 MGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFN 239
MGK+FSK+ G KEMRILM GLD AGKTTILYKLKLG +VTTIPTVGFNVETV+YKN+KFN
Sbjct: 1 MGKMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60
Query: 240 VWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVF 419
VWDVGGQ+KIRPLWRHYYTGTQGLIFV+D D R+DEAR+ELHRIINDREMR+A++L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 420 ANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
ANKQDL +A++P+EIQE+LGLTR+ R WYVQP+CA SGDGLYEGLTWLTS+
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCAASGDGLYEGLTWLTSN 172
>sp|P40946|ARF3_DROME ADP-ribosylation factor 3
Length = 175
Score = 290 bits (742), Expect = 3e-78
Identities = 140/176 (79%), Positives = 159/176 (90%), Gaps = 1/176 (0%)
Frame = +3
Query: 60 MGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFN 239
MGKL SK+ G KEMRILMLGLD AGKTTILYKLKLG +VTTIPTVGFNVETV+YKN+KFN
Sbjct: 1 MGKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60
Query: 240 VWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVF 419
VWDVGGQ+KIRPLWRHYYTGTQGLIFV+D AD R+DEAR ELHRIINDREMR+A++L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIF 120
Query: 420 ANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTS-HKI 584
ANKQDL +A++P+EIQE+LGLTR+ R WYVQP+CATSGDGL EGL WLTS HK+
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCATSGDGLSEGLIWLTSNHKL 175
>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1
Length = 181
Score = 249 bits (637), Expect = 4e-66
Identities = 121/175 (69%), Positives = 143/175 (81%)
Frame = +3
Query: 54 IEMGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIK 233
+ GKLFS+L KKEMRILM+GLD AGKTTILYKLKLG VTTIPT+GFNVETV YKNI
Sbjct: 3 LSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 234 FNVWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLL 413
F VWDVGGQ+KIRPLWRHY+ TQGLIFV+DS D R+ EAR+ELHR++N+ E+R+AVLL
Sbjct: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
Query: 414 VFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
VFANKQDL A+ EI ++LGL L R WY+Q CATSG+GLYEGL WL+++
Sbjct: 123 VFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLDWLSNN 176
>sp|Q9Y7Z2|ARF2_SCHPO Probable ADP-ribosylation factor
Length = 184
Score = 248 bits (633), Expect = 1e-65
Identities = 122/171 (71%), Positives = 141/171 (82%)
Frame = +3
Query: 66 KLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFNVW 245
K FS+L KEMRILMLGLD AGKTTILYKLKL +V TIPTVGFNVETV+YKNIKFNVW
Sbjct: 11 KPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVW 70
Query: 246 DVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVFAN 425
DVGGQ+KIRPLWRHY+TGT+GLIFV+DSAD R+ EAR+ELHRII+DREMR+ +LLV AN
Sbjct: 71 DVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLAN 130
Query: 426 KQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
KQDL AL P +I + L L +L R+W VQP CA +GDGL EGL WL+ +
Sbjct: 131 KQDLPGALSPAQITDVLQLDKLK-DRLWNVQPTCALTGDGLLEGLAWLSQN 180
>sp|P49076|ARF_MAIZE ADP-ribosylation factor
Length = 181
Score = 247 bits (631), Expect = 2e-65
Identities = 120/171 (70%), Positives = 141/171 (82%)
Frame = +3
Query: 66 KLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFNVW 245
KLFS+L KKEMRILM+GLD AGKTTILYKLKLG VTTIPT+GFNVETV YKNI F VW
Sbjct: 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
Query: 246 DVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVFAN 425
DVGGQ+KIRPLWRHY+ TQGLIFV+DS D R+ EAR+ELHR++N+ E+R+AVLLVFAN
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
Query: 426 KQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
KQDL A+ EI ++LGL L R WY+Q CAT+G+GLYEGL WL+S+
Sbjct: 127 KQDLPNAMNAAEITDKLGLNSLR-QRHWYIQSTCATTGEGLYEGLDWLSSN 176
>sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like
Length = 181
Score = 247 bits (631), Expect = 2e-65
Identities = 120/175 (68%), Positives = 142/175 (81%)
Frame = +3
Query: 54 IEMGKLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIK 233
+ KLFS+L KKEMRILM+GLD AGKTTILYKLKLG VTTIPT+GFNVETV YKNI
Sbjct: 3 LSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 234 FNVWDVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLL 413
F VWDVGGQ+KIRPLWRHY+ TQGLIFV+DS D R+ EAR+ELHR++N+ E+R+AVLL
Sbjct: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
Query: 414 VFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
VFANKQDL A+ EI ++LGL L R WY+Q CATSG+GLYEGL WL+++
Sbjct: 123 VFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLDWLSNN 176
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 247 bits (631), Expect = 2e-65
Identities = 120/169 (71%), Positives = 139/169 (82%)
Frame = +3
Query: 69 LFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFNVWD 248
L +L GKKEMRILM+GLD AGKTTILYKLKLG VTTIPT+GFNVETV YKNI F VWD
Sbjct: 8 LLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 67
Query: 249 VGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVFANK 428
VGGQ+KIRPLWRHY+ TQGLIFV+DS D R++EAREEL R++N+ E+R+AVLLVFANK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANK 127
Query: 429 QDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTS 575
QDL A+ P EI ++LGL L R WY+Q CATSGDGLYEGL WL++
Sbjct: 128 QDLPNAMNPAEITDKLGLHSLR-NRSWYIQATCATSGDGLYEGLDWLST 175
>sp|P51823|ARF_ORYSA ADP-ribosylation factor
Length = 181
Score = 246 bits (629), Expect = 4e-65
Identities = 120/171 (70%), Positives = 141/171 (82%)
Frame = +3
Query: 66 KLFSKLLGKKEMRILMLGLDGAGKTTILYKLKLGTAVTTIPTVGFNVETVSYKNIKFNVW 245
KLFS+L KKEMRILM+GLD AGKTTILYKLKLG VTTIPT+GFNVETV YKNI F VW
Sbjct: 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
Query: 246 DVGGQEKIRPLWRHYYTGTQGLIFVIDSADYTRLDEAREELHRIINDREMREAVLLVFAN 425
DVGGQ+KIRPLWRHY+ TQGLIFV+DS D R+ EAR+ELHR++N+ E+R+AVLLVFAN
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFAN 126
Query: 426 KQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACATSGDGLYEGLTWLTSH 578
KQDL A+ EI ++LGL L R WY+Q CATSG+GLYEGL WL+++
Sbjct: 127 KQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLDWLSNN 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,706,231
Number of Sequences: 369166
Number of extensions: 1808776
Number of successful extensions: 6492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6349
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)