Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_K22
(324 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9PPX6|PYRH_UREPA Uridylate kinase (UK) (Uridine monopho... 30 1.3
sp|O13559|YRF14_YEAST Y'helicase protein 1 copy 4 30 2.2
sp|P24088|YRF11_YEAST Y'helicase protein 1 copies 1/5/8 29 3.8
sp|P53345|YRF13_YEAST Y'helicase protein 1 copies 3/7 29 3.8
sp|P53819|YRF16_YEAST Y'helicase protein 1 copy 6 29 3.8
sp|P40105|YRF12_YEAST Y'helicase protein 1 copy 2 29 3.8
sp|P57114|RUVX_MYCPN Putative Holliday junction resolvase 28 6.5
sp|Q9BQP7|CT072_HUMAN Protein C20orf72 28 8.5
sp|Q09829|YAD3_SCHPO Hypothetical protein C4G8.03c in chrom... 28 8.5
>sp|Q9PPX6|PYRH_UREPA Uridylate kinase (UK) (Uridine monophosphate kinase) (UMP kinase)
Length = 235
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -1
Query: 258 SLKNSLYKSIYRQR**TLLIIAGFGWSYFTVDHCSV*RKCE 136
S N++ K+I +++ ++ +AG G+ YFT D C+ R E
Sbjct: 110 SSANNIKKAIEKEQ--VMIFVAGTGFPYFTTDSCAAIRAAE 148
>sp|O13559|YRF14_YEAST Y'helicase protein 1 copy 4
Length = 1382
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -2
Query: 185 AGVILQSITVLFRENANYIDQKTKNKKTFMNKSVTHQITK*HNTRRDSHVTAVGVKRKV 9
A +IL++ VLFRE ID+ +N F V ++ RRD++ +K KV
Sbjct: 15 ASLILRNREVLFREPKRGIDEYLENDSFFQMIPVKYREIVLPKLRRDTNKMTAALKNKV 73
>sp|P24088|YRF11_YEAST Y'helicase protein 1 copies 1/5/8
Length = 1796
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 191 DSAGVILQSITVLFRENANYIDQKTKNKKTFMNKSVTHQITK*HNTRRDSHVTAVGVKRK 12
D A +IL++ VLFRE ID+ +N V ++ RRD++ +K K
Sbjct: 427 DIASLILRNREVLFREPKRGIDEYLENDSFLQMIPVKYREIVLPKLRRDTNKMTAALKNK 486
Query: 11 V 9
V
Sbjct: 487 V 487
>sp|P53345|YRF13_YEAST Y'helicase protein 1 copies 3/7
Length = 1859
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 191 DSAGVILQSITVLFRENANYIDQKTKNKKTFMNKSVTHQITK*HNTRRDSHVTAVGVKRK 12
D A +IL++ VLFRE ID+ +N V ++ RRD++ +K K
Sbjct: 491 DIASLILRNREVLFREPKRGIDEYLENDSFLQMIPVKYREIVLPKLRRDTNKMTAALKNK 550
Query: 11 V 9
V
Sbjct: 551 V 551
>sp|P53819|YRF16_YEAST Y'helicase protein 1 copy 6
Length = 1859
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 191 DSAGVILQSITVLFRENANYIDQKTKNKKTFMNKSVTHQITK*HNTRRDSHVTAVGVKRK 12
D A +IL++ VLFRE ID+ +N V ++ RRD++ +K K
Sbjct: 491 DIASLILRNREVLFREPKRGIDEYLENDSFLQMIPVKYREIVLPKLRRDTNKMTAALKNK 550
Query: 11 V 9
V
Sbjct: 551 V 551
>sp|P40105|YRF12_YEAST Y'helicase protein 1 copy 2
Length = 1681
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 191 DSAGVILQSITVLFRENANYIDQKTKNKKTFMNKSVTHQITK*HNTRRDSHVTAVGVKRK 12
D A +IL++ VLFRE ID+ +N V ++ RRD++ +K K
Sbjct: 313 DIASLILRNREVLFREPKRGIDEYLENDSFLQMIPVKYREIVLPKLRRDTNKMTAALKNK 372
Query: 11 V 9
V
Sbjct: 373 V 373
>sp|P57114|RUVX_MYCPN Putative Holliday junction resolvase
Length = 140
Score = 28.1 bits (61), Expect = 6.5
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = -1
Query: 318 IFQFPSPIQVWKPHNNLGMLSLKNSLYKSIYRQR**TLLIIAGF-GWSYFTVDHCSV*RK 142
I +FPSP +V+ NNL N+L+K + + + I+ GF + Y + S+ +
Sbjct: 22 IDRFPSPFRVFAVQNNL--QQAVNTLFKDLKQAGYELVQIVIGFPHFHYQSSIQVSIHKF 79
Query: 141 CELYRSKNQEQKNIHEQIGYTSNYK 67
EL +++ + ++ G TS K
Sbjct: 80 VELIKTRFNVPVTLIDESGTTSEVK 104
>sp|Q9BQP7|CT072_HUMAN Protein C20orf72
Length = 344
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -3
Query: 85 LHIKLQNNIIRGVTRMSQRSVSKEKSF 5
L I LQ N+I VTR+ Q++++K++ F
Sbjct: 121 LKIPLQRNVIPSVTRVLQQTMTKQQVF 147
>sp|Q09829|YAD3_SCHPO Hypothetical protein C4G8.03c in chromosome I
Length = 780
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -2
Query: 140 ANYIDQKTKN-----KKTFMNKSVTHQITK*HNTRRDSHVTA 30
ANY+ Q+ N +K + +S++H I K NTR H+ A
Sbjct: 731 ANYVMQRFLNVADESQKFLILRSISHVIPKIQNTRHGRHILA 772
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,004,367
Number of Sequences: 369166
Number of extensions: 607706
Number of successful extensions: 1121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)