Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_H14
(419 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62332|ARF6_RAT ADP-ribosylation factor 6 >gi|59799156|s... 129 3e-30
sp|P26990|ARF6_CHICK ADP-ribosylation factor 6 127 7e-30
sp|P51645|ARF6_XENLA ADP-ribosylation factor 6 127 1e-29
sp|P40946|ARF3_DROME ADP-ribosylation factor 3 122 2e-28
sp|P91924|ARF_DUGJA ADP-ribosylation factor 99 3e-21
sp|P49076|ARF_MAIZE ADP-ribosylation factor 97 2e-20
sp|P34727|ARF_AJECA ADP-ribosylation factor 97 2e-20
sp|Q94650|ARF_PLAFA ADP-ribosylation factor 96 2e-20
sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like 96 3e-20
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 96 3e-20
>sp|P62332|ARF6_RAT ADP-ribosylation factor 6
sp|P62331|ARF6_MOUSE ADP-ribosylation factor 6
sp|P62330|ARF6_HUMAN ADP-ribosylation factor 6
Length = 175
Score = 129 bits (323), Expect = 3e-30
Identities = 59/78 (75%), Positives = 73/78 (93%)
Frame = +1
Query: 1 LDEAREELHRIINDREMREAVLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPA 180
+DEAR+ELHRIINDREMR+A++L+FANKQDL +A++P+EIQE+LGLTR+ R WYVQP+
Sbjct: 96 IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPS 154
Query: 181 CATSGDGLYEGLTWLTSH 234
CATSGDGLYEGLTWLTS+
Sbjct: 155 CATSGDGLYEGLTWLTSN 172
>sp|P26990|ARF6_CHICK ADP-ribosylation factor 6
Length = 175
Score = 127 bits (320), Expect = 7e-30
Identities = 58/78 (74%), Positives = 73/78 (93%)
Frame = +1
Query: 1 LDEAREELHRIINDREMREAVLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPA 180
+DEAR+ELHRIINDREMR+A++L+FANKQDL +A++P+EIQE+LGLTR+ R WYVQP+
Sbjct: 96 IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPS 154
Query: 181 CATSGDGLYEGLTWLTSH 234
CAT+GDGLYEGLTWLTS+
Sbjct: 155 CATTGDGLYEGLTWLTSN 172
>sp|P51645|ARF6_XENLA ADP-ribosylation factor 6
Length = 175
Score = 127 bits (318), Expect = 1e-29
Identities = 58/78 (74%), Positives = 72/78 (92%)
Frame = +1
Query: 1 LDEAREELHRIINDREMREAVLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPA 180
+DEAR+ELHRIINDREMR+A++L+FANKQDL +A++P+EIQE+LGLTR+ R WYVQP+
Sbjct: 96 IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPS 154
Query: 181 CATSGDGLYEGLTWLTSH 234
CA SGDGLYEGLTWLTS+
Sbjct: 155 CAASGDGLYEGLTWLTSN 172
>sp|P40946|ARF3_DROME ADP-ribosylation factor 3
Length = 175
Score = 122 bits (307), Expect = 2e-28
Identities = 59/81 (72%), Positives = 72/81 (88%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 LDEAREELHRIINDREMREAVLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPA 180
+DEAR ELHRIINDREMR+A++L+FANKQDL +A++P+EIQE+LGLTR+ R WYVQP+
Sbjct: 96 IDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPS 154
Query: 181 CATSGDGLYEGLTWLTS-HKI 240
CATSGDGL EGL WLTS HK+
Sbjct: 155 CATSGDGLSEGLIWLTSNHKL 175
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 99.4 bits (246), Expect = 3e-21
Identities = 48/77 (62%), Positives = 61/77 (79%)
Frame = +1
Query: 1 LDEAREELHRIINDREMREAVLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPA 180
++EAREEL R++N+ E+R+AVLLVFANKQDL A+ P EI ++LGL L R WY+Q
Sbjct: 100 VNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLR-NRSWYIQAT 158
Query: 181 CATSGDGLYEGLTWLTS 231
CATSGDGLYEGL WL++
Sbjct: 159 CATSGDGLYEGLDWLST 175
>sp|P49076|ARF_MAIZE ADP-ribosylation factor
Length = 181
Score = 96.7 bits (239), Expect = 2e-20
Identities = 46/76 (60%), Positives = 60/76 (78%)
Frame = +1
Query: 7 EAREELHRIINDREMREAVLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACA 186
EAR+ELHR++N+ E+R+AVLLVFANKQDL A+ EI ++LGL L R WY+Q CA
Sbjct: 102 EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLR-QRHWYIQSTCA 160
Query: 187 TSGDGLYEGLTWLTSH 234
T+G+GLYEGL WL+S+
Sbjct: 161 TTGEGLYEGLDWLSSN 176
>sp|P34727|ARF_AJECA ADP-ribosylation factor
Length = 183
Score = 96.7 bits (239), Expect = 2e-20
Identities = 46/75 (61%), Positives = 59/75 (78%)
Frame = +1
Query: 7 EAREELHRIINDREMREAVLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACA 186
EAREEL R++N+ E+R+A+LLVFANKQDL A+ P EI ++LGL L+ R WY+Q CA
Sbjct: 102 EAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLT-RRAWYIQSTCA 160
Query: 187 TSGDGLYEGLTWLTS 231
T+GDGLYEGL WL +
Sbjct: 161 TTGDGLYEGLEWLAN 175
>sp|Q94650|ARF_PLAFA ADP-ribosylation factor
Length = 181
Score = 96.3 bits (238), Expect = 2e-20
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = +1
Query: 1 LDEAREELHRIINDREMREAVLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPA 180
+D+AREELHR+IN+ E+++A++LVFANKQDL A+ E+ E+L L + R W++Q
Sbjct: 100 IDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIR-ERNWFIQST 158
Query: 181 CATSGDGLYEGLTWLTSH 234
CAT GDGLYEG WLT+H
Sbjct: 159 CATRGDGLYEGFDWLTTH 176
>sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like
Length = 181
Score = 95.9 bits (237), Expect = 3e-20
Identities = 46/76 (60%), Positives = 60/76 (78%)
Frame = +1
Query: 7 EAREELHRIINDREMREAVLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACA 186
EAR+ELHR++N+ E+R+AVLLVFANKQDL A+ EI ++LGL L R WY+Q CA
Sbjct: 102 EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCA 160
Query: 187 TSGDGLYEGLTWLTSH 234
TSG+GLYEGL WL+++
Sbjct: 161 TSGEGLYEGLDWLSNN 176
>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1
Length = 181
Score = 95.9 bits (237), Expect = 3e-20
Identities = 46/76 (60%), Positives = 60/76 (78%)
Frame = +1
Query: 7 EAREELHRIINDREMREAVLLVFANKQDLKEALRPNEIQERLGLTRLSGGRIWYVQPACA 186
EAR+ELHR++N+ E+R+AVLLVFANKQDL A+ EI ++LGL L R WY+Q CA
Sbjct: 102 EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCA 160
Query: 187 TSGDGLYEGLTWLTSH 234
TSG+GLYEGL WL+++
Sbjct: 161 TSGEGLYEGLDWLSNN 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,888,554
Number of Sequences: 369166
Number of extensions: 894226
Number of successful extensions: 2099
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2033
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)