Planarian EST Database

DrC_00246

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00246 GTCCGATTTAATTGCTGATTTTTTAGCAAGAGAACAAGAACAGTTAGGTGATATTGATGA CTTTAAATTTGATGAGATAAATCATGACTGTTAATTTATATTTAATAATAGATTTGTTAA AATATTTTTAAGCATTCAACAGTCAAGTTGATGGGTTTGAAACGTTCCCTGACAGCAATG ATTATGCTAGTAATGATTTTACTAGCAATGAATTCCAAGAAAATAGTTCTTACTTACCTT CAACAAATTTTGATAGTAGACCTGAAGTATCAATTCCAAGGATAGAACCTGAAAAAATAC TTGTATGGCGAAGAGAATTCGAGGAGCGAATTCTTAAGAAGGATGAAGAAGAATTGGAAA GAATGCGCATTTTGGAAAAAGATGCGAAAAAAGAACTTGATGATTGGAATTCTCATCATA ACGAACAATTACTGAATAAACGTAAGCTCAATCGTGAAACTCAAGGAGTATTTGTGAAAG AACGCGATCAACCAATTCCCGGCAGCGAATGGCAAAGAGTTTGCAAAATGTGCGAATTTA ATACTCGCTCCGGAGTAACTGTTAAACCTGTTGCACCAGGCGGAGAAGGCATTCCAGTTT ATACTCCAAAGGATACGAGTCGAATGAAATCGATATTGCTGTCACTGAAAACTGATCCCT TAGTCAGAGCATAAGCAAGCAATGCTCAAACTTTCAAGTGCCTATTTCATCAGTATGATA CCGACGGACGCCTTATGGTTGACTTGAAATAAATTATTTGTTTCATATTGATTTGATTGT GTCTTATTTTGGTGTCACTTTGTTTTATATTTAATATTAATATTAT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00246
         (826 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VWA1|CLC_DROME  Clathrin light chain (dClc)                   79   2e-14
sp|O08585|CLCA_MOUSE  Clathrin light chain A (Lca)                 79   2e-14
sp|P08081|CLCA_RAT  Clathrin light chain A (Lca)                   75   2e-13
sp|P08082|CLCB_RAT  Clathrin light chain B (Lcb)                   75   2e-13
sp|Q6IRU5|CLCB_MOUSE  Clathrin light chain B (Lcb)                 75   2e-13
sp|P09497|CLCB_HUMAN  Clathrin light chain B (Lcb)                 75   3e-13
sp|P04973|CLCA_BOVIN  Clathrin light chain A (Lca)                 75   3e-13
sp|P04975|CLCB_BOVIN  Clathrin light chain B (Lcb)                 75   3e-13
sp|P09496|CLCA_HUMAN  Clathrin light chain A (Lca)                 73   8e-13
sp|Q9USP6|CLC1_SCHPO  Clathrin light chain (CLC)                   45   2e-04

>sp|Q9VWA1|CLC_DROME Clathrin light chain (dClc)
          Length = 219

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 52/131 (39%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
 Frame = +3

Query: 279 RIEPEKILVWRREFEERILKKDEEELERMRILEKDAKKELDDWNSHHNEQLLNKRKL--- 449
           R EPEKI  WR E ++R+ +KD EE  +   L + +KKELDDW     E  ++K KL   
Sbjct: 100 REEPEKIRKWREEQKQRLEEKDIEEERKKEELRQQSKKELDDWLRQIGES-ISKTKLASR 158

Query: 450 NRETQGVFVKERDQPIPGSEWQRVCKMCEFNTRSGVTVKPVAPGGEGIPVYTPKDTSRMK 629
           N E Q   + E     PG+EW+R+ K+C+FN +       V   G        KD SRM+
Sbjct: 159 NAEKQAATL-ENGTIEPGTEWERIAKLCDFNPK-------VNKAG--------KDVSRMR 202

Query: 630 SILLSLKTDPL 662
           SI L LK +P+
Sbjct: 203 SIYLHLKQNPI 213

>sp|O08585|CLCA_MOUSE Clathrin light chain A (Lca)
          Length = 235

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
 Frame = +3

Query: 168 PDSNDYASNDFTSNEFQENSSYLPSTNFDSRPEVSIPRIEPEKILVWRREFEERILKKDE 347
           PD+ D   N      +QE++   P+ ++ +  EV   + EPE I  WR E  ER+   D 
Sbjct: 71  PDAVDGVMN---GEYYQESNG--PTDSYAAISEVDRLQSEPESIRKWREEQTERLEALDA 125

Query: 348 EELERMRILEKDAKKELDDWNSHHNEQLLNKRKLNRETQGVFVKER-------------- 485
              ++    ++ A KEL++W +  +EQL   +  NR  +  F K+               
Sbjct: 126 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFYKQPFADVIGYVAAEEAF 185

Query: 486 ----DQPIPGSEWQRVCKMCEFNTRSGVTVKPVAPGGEGIPVYTPKDTSRMKSILLSLKT 653
               D+  PG+EW+RV  +C+FN +S                   KD SRM+S+L+SLK 
Sbjct: 186 VNDIDESSPGTEWERVAPLCDFNPKSSKQA---------------KDVSRMRSVLISLKQ 230

Query: 654 DPLV 665
            PLV
Sbjct: 231 APLV 234

>sp|P08081|CLCA_RAT Clathrin light chain A (Lca)
          Length = 248

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
 Frame = +3

Query: 168 PDSNDYASNDFTSNEFQENSSYLPSTNFDSRPEVSIPRIEPEKILVWRREFEERILKKDE 347
           PD+ D   N      +QE++   P+ ++ +  EV   + EPE I  WR E  ER+   D 
Sbjct: 72  PDAVDGVMN---GEYYQESNG--PTDSYAAISEVDRLQSEPESIRKWREEQTERLEALDA 126

Query: 348 EELERMRILEKDAKKELDDWNSHHNEQLLNKRKLNR------------------------ 455
              ++    ++ A KEL++W +  +EQL   +  NR                        
Sbjct: 127 NSRKQEAEWKEKAVKELEEWYARQDEQLQKTKASNRVADEAFYKQPFADVIGYVTNINHP 186

Query: 456 ------ETQGVFVKERDQPIPGSEWQRVCKMCEFNTRSGVTVKPVAPGGEGIPVYTPKDT 617
                   +  FV + D+  PG+EW+RV ++C+FN +S                   KD 
Sbjct: 187 CYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQA---------------KDV 231

Query: 618 SRMKSILLSLKTDPLV 665
           SRM+S+L+SLK  PLV
Sbjct: 232 SRMRSVLISLKQAPLV 247

>sp|P08082|CLCB_RAT Clathrin light chain B (Lcb)
          Length = 229

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 19/147 (12%)
 Frame = +3

Query: 285 EPEKILVWRREFEERILKKDEEELERMRILEKDAKKELDDWNSHHNEQLLNKRKLNRE-- 458
           EPE I  WR E ++R+ + D       +   + AKK+L++WN   +EQ + K K+N    
Sbjct: 99  EPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQ-VEKNKINNRIA 157

Query: 459 -----------------TQGVFVKERDQPIPGSEWQRVCKMCEFNTRSGVTVKPVAPGGE 587
                            ++  FVKE  +  PG+EW++V ++C+FN +S            
Sbjct: 158 DKAFYQQPDADTIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQC-------- 209

Query: 588 GIPVYTPKDTSRMKSILLSLKTDPLVR 668
                  KD SR++S+L+SLK  PL R
Sbjct: 210 -------KDVSRLRSVLMSLKQTPLSR 229

>sp|Q6IRU5|CLCB_MOUSE Clathrin light chain B (Lcb)
          Length = 229

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 19/147 (12%)
 Frame = +3

Query: 285 EPEKILVWRREFEERILKKDEEELERMRILEKDAKKELDDWNSHHNEQLLNKRKLNRE-- 458
           EPE I  WR E ++R+ + D       +   + AKK+L++WN   +EQ + K K+N    
Sbjct: 99  EPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQ-VEKNKINNRIA 157

Query: 459 -----------------TQGVFVKERDQPIPGSEWQRVCKMCEFNTRSGVTVKPVAPGGE 587
                            ++  FVKE  +  PG+EW++V ++C+FN +S            
Sbjct: 158 DKAFYQQPDADTIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQC-------- 209

Query: 588 GIPVYTPKDTSRMKSILLSLKTDPLVR 668
                  KD SR++S+L+SLK  PL R
Sbjct: 210 -------KDVSRLRSVLMSLKQTPLSR 229

>sp|P09497|CLCB_HUMAN Clathrin light chain B (Lcb)
          Length = 229

 Score = 74.7 bits (182), Expect = 3e-13
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
 Frame = +3

Query: 285 EPEKILVWRREFEERILKKDEEELERMRILEKDAKKELDDWNSHHNEQLLNKRKLNRE-- 458
           EPE I  WR E  +R+ + D       +   + AKK+L++WN   +EQ + K K+N    
Sbjct: 99  EPESIRKWREEQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQ-VEKNKINNRIA 157

Query: 459 -----------------TQGVFVKERDQPIPGSEWQRVCKMCEFNTRSGVTVKPVAPGGE 587
                            ++  FVKE  +  PG+EW++V ++C+FN +S            
Sbjct: 158 DKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQC-------- 209

Query: 588 GIPVYTPKDTSRMKSILLSLKTDPLVR 668
                  KD SR++S+L+SLK  PL R
Sbjct: 210 -------KDVSRLRSVLMSLKQTPLSR 229

>sp|P04973|CLCA_BOVIN Clathrin light chain A (Lca)
          Length = 243

 Score = 74.7 bits (182), Expect = 3e-13
 Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 30/196 (15%)
 Frame = +3

Query: 168 PDSNDYASNDFTSNEFQENSSYLPSTNFDSRPEVSIPRIEPEKILVWRREFEERILKKDE 347
           PD+ D  +N    + +QE++   P+ ++ +  +V   + EPE I  WR E  ER+   D 
Sbjct: 67  PDAVDGVTN---GDYYQESNG--PTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 121

Query: 348 EELERMRILEKDAKKELDDWNSHHNEQLLNKRKLNR------------------------ 455
              ++    ++ A KELD+W +  +EQL   +  NR                        
Sbjct: 122 NSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINHP 181

Query: 456 ------ETQGVFVKERDQPIPGSEWQRVCKMCEFNTRSGVTVKPVAPGGEGIPVYTPKDT 617
                   +  FV + ++  PG+EW+RV ++C+FN +S                   KD 
Sbjct: 182 CYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQA---------------KDV 226

Query: 618 SRMKSILLSLKTDPLV 665
           SRM+S+L+SLK  PLV
Sbjct: 227 SRMRSVLISLKQAPLV 242

>sp|P04975|CLCB_BOVIN Clathrin light chain B (Lcb)
          Length = 228

 Score = 74.7 bits (182), Expect = 3e-13
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
 Frame = +3

Query: 285 EPEKILVWRREFEERILKKDEEELERMRILEKDAKKELDDWNSHHNEQLLNKRKLNRE-- 458
           EPE I  WR E  +R+ + D       +   + AKK+L++WN   +EQ + K K+N    
Sbjct: 98  EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ-VEKNKINNRIA 156

Query: 459 -----------------TQGVFVKERDQPIPGSEWQRVCKMCEFNTRSGVTVKPVAPGGE 587
                            ++  FVKE  +  PG+EW++V ++C+FN +S            
Sbjct: 157 DKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQC-------- 208

Query: 588 GIPVYTPKDTSRMKSILLSLKTDPLVR 668
                  KD SR++S+L+SLK  PL R
Sbjct: 209 -------KDVSRLRSVLMSLKQTPLSR 228

>sp|P09496|CLCA_HUMAN Clathrin light chain A (Lca)
          Length = 248

 Score = 73.2 bits (178), Expect = 8e-13
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
 Frame = +3

Query: 168 PDSNDYASNDFTSNEFQENSSYLPSTNFDSRPEVSIPRIEPEKILVWRREFEERILKKDE 347
           PD+ D   N      +QE++   P+ ++ +  +V   + EPE I  WR E  ER+   D 
Sbjct: 72  PDAVDGVMN---GEYYQESNG--PTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDA 126

Query: 348 EELERMRILEKDAKKELDDWNSHHNEQLLNKRKLNR------------------------ 455
              ++    ++ A KEL++W +  +EQL   +  NR                        
Sbjct: 127 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINHP 186

Query: 456 ------ETQGVFVKERDQPIPGSEWQRVCKMCEFNTRSGVTVKPVAPGGEGIPVYTPKDT 617
                   +  FV + D+  PG+EW+RV ++C+FN +S                   KD 
Sbjct: 187 CYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQA---------------KDV 231

Query: 618 SRMKSILLSLKTDPLV 665
           SRM+S+L+SLK  PLV
Sbjct: 232 SRMRSVLISLKQAPLV 247

>sp|Q9USP6|CLC1_SCHPO Clathrin light chain (CLC)
          Length = 229

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 11/180 (6%)
 Frame = +3

Query: 150 DGFETFPDSNDYASNDFTSN------EFQENSSY-LPSTNFDSRPEVSIPRIE---PEKI 299
           D    F + ++     F  N      E Q + ++  P   +  + EV  P  E   PE +
Sbjct: 50  DALLNFENDSEAEQTRFEQNFPPIDAEMQASGTFSAPKAPYMGQAEVHPPEDESGDPEPV 109

Query: 300 LVWRREFEERILKKDEEELERMRILEKDAKKELDDWNSHHNEQLLNKRKLNRETQGVFVK 479
             W+ +  +RI ++DE   +      + A+K +DD+  + N++       +R+ Q   ++
Sbjct: 110 RKWKEDQMKRIQERDESSKKLRESNIEKARKAIDDFYENFNDKRDKVIAKSRKEQEKLLE 169

Query: 480 ERDQPIPG-SEWQRVCKMCEFNTRSGVTVKPVAPGGEGIPVYTPKDTSRMKSILLSLKTD 656
           E +    G + W+R+ K+ + +       KP A G         + T R + +L+SL  D
Sbjct: 170 ENESKSTGTTSWERILKLIDLSD------KPEAHG---------RSTERFRELLISLAKD 214

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,147,143
Number of Sequences: 369166
Number of extensions: 1553375
Number of successful extensions: 5682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5627
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00246

Planaria EST Database

DrC_00246

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail