Planaria EST Database

DrC_00242

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00242
         (1040 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91060|TBA_NOTVI  Tubulin alpha chain                          357   4e-98
sp|Q94572|TBA3_HOMAM  Tubulin alpha-3 chain (Alpha-III tubulin)   356   7e-98
sp|P06603|TBA1_DROME  Tubulin alpha-1 chain                       355   9e-98
sp|P52273|TBA_BOMMO  Tubulin alpha chain                          355   9e-98
sp|Q8WQ47|TBA_LEPDS  Tubulin alpha chain (Allergen Lep d ?)       355   9e-98
sp|Q25008|TBA1_HOMAM  Tubulin alpha-1 chain (Alpha-I tubulin)     355   2e-97
sp|Q06331|TBA_OCTDO  Tubulin alpha chain                          354   2e-97
sp|P36220|TBA_TORMA  Tubulin alpha chain (Alpha T6)               354   3e-97
sp|P30436|TBA_ONCKE  Tubulin alpha chain                          353   3e-97
sp|P18258|TBA1_PARLI  Tubulin alpha-1 chain                       353   3e-97

>sp|Q91060|TBA_NOTVI Tubulin alpha chain
          Length = 450

 Score =  357 bits (915), Expect = 4e-98
 Identities = 167/208 (80%), Positives = 190/208 (91%)
 Frame = -3

Query: 792 LEYDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQ 613
           L +DGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV+EITNACF+P NQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 301

Query: 612 MVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPST 433
           MVKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPT 361

Query: 432 QVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEA 253
            VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 AVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 252 REDLAALEKDYEEAGMDTEVLHEDEPTE 169
           RED+AALEKDYEE G+D+    EDE  E
Sbjct: 422 REDMAALEKDYEEVGLDSYEGEEDEGEE 449

>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
          Length = 451

 Score =  356 bits (913), Expect = 7e-98
 Identities = 167/208 (80%), Positives = 189/208 (90%)
 Frame = -3

Query: 792 LEYDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQ 613
           L +DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSVSEITNACF+P NQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVSEITNACFEPANQ 301

Query: 612 MVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPST 433
           MVKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361

Query: 432 QVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEA 253
            VPGGDLA+V R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEF+EA
Sbjct: 362 AVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEA 421

Query: 252 REDLAALEKDYEEAGMDTEVLHEDEPTE 169
           REDLAALEKDYEE G+D+     +E  E
Sbjct: 422 REDLAALEKDYEEVGVDSADAEGEEEGE 449

>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
          Length = 450

 Score =  355 bits (912), Expect = 9e-98
 Identities = 165/198 (83%), Positives = 186/198 (93%)
 Frame = -3

Query: 792 LEYDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQ 613
           L +DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 301

Query: 612 MVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPST 433
           MVKC+P+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 432 QVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEA 253
            VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 252 REDLAALEKDYEEAGMDT 199
           REDLAALEKDYEE GMD+
Sbjct: 422 REDLAALEKDYEEVGMDS 439

>sp|P52273|TBA_BOMMO Tubulin alpha chain
          Length = 450

 Score =  355 bits (912), Expect = 9e-98
 Identities = 165/198 (83%), Positives = 186/198 (93%)
 Frame = -3

Query: 792 LEYDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQ 613
           L +DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 301

Query: 612 MVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPST 433
           MVKC+P+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 432 QVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEA 253
            VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 252 REDLAALEKDYEEAGMDT 199
           REDLAALEKDYEE GMD+
Sbjct: 422 REDLAALEKDYEEVGMDS 439

>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
          Length = 450

 Score =  355 bits (912), Expect = 9e-98
 Identities = 169/212 (79%), Positives = 191/212 (90%)
 Frame = -3

Query: 792 LEYDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQ 613
           L +DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISS+KA HEQL+VSEITN CF+P NQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSEKAYHEQLTVSEITNTCFEPANQ 301

Query: 612 MVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPST 433
           MVKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPT 361

Query: 432 QVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEA 253
            VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 252 REDLAALEKDYEEAGMDTEVLHEDEPTENAEF 157
           REDLAALEKDYEE G+D+    E + T   EF
Sbjct: 422 REDLAALEKDYEEVGLDST---EADDTAGEEF 450

>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
          Length = 451

 Score =  355 bits (910), Expect = 2e-97
 Identities = 165/198 (83%), Positives = 185/198 (93%)
 Frame = -3

Query: 792 LEYDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQ 613
           L +DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 301

Query: 612 MVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPST 433
           MVKC+P+ GKYMACCLLYRGDVV KDV++AIANIK+K+ IQFVDWCPTGFKVG+NYQP T
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 432 QVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEA 253
            VPG DLA+V R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEF+EA
Sbjct: 362 VVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEA 421

Query: 252 REDLAALEKDYEEAGMDT 199
           REDLAALEKDYEE GMD+
Sbjct: 422 REDLAALEKDYEEVGMDS 439

>sp|Q06331|TBA_OCTDO Tubulin alpha chain
          Length = 451

 Score =  354 bits (909), Expect = 2e-97
 Identities = 162/205 (79%), Positives = 190/205 (92%)
 Frame = -3

Query: 792 LEYDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQ 613
           L +DGALNVDLTEFQTNLVPYPRIHFPLVTYAP+IS++KA HEQL+V+E+T+ACF+P NQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQ 301

Query: 612 MVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPST 433
           MVKC+P+ GKYMACC+LYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361

Query: 432 QVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEA 253
            VPGGDLA+V+R++CMLSNTTA+ EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 252 REDLAALEKDYEEAGMDTEVLHEDE 178
           REDLAALEKDYEE G+DT    E+E
Sbjct: 422 REDLAALEKDYEEVGLDTFEAEEEE 446

>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
          Length = 451

 Score =  354 bits (908), Expect = 3e-97
 Identities = 164/198 (82%), Positives = 186/198 (93%)
 Frame = -3

Query: 792 LEYDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQ 613
           L +DGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSVSEITNACF+P NQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQ 301

Query: 612 MVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPST 433
           MVKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361

Query: 432 QVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEA 253
            VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 252 REDLAALEKDYEEAGMDT 199
           RED+AALEKDYEE G+D+
Sbjct: 422 REDMAALEKDYEEVGVDS 439

>sp|P30436|TBA_ONCKE Tubulin alpha chain
          Length = 444

 Score =  353 bits (907), Expect = 3e-97
 Identities = 168/208 (80%), Positives = 190/208 (91%)
 Frame = -3

Query: 792 LEYDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQ 613
           L +DGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV++ITNACF+P NQ
Sbjct: 236 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVADITNACFEPANQ 295

Query: 612 MVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPST 433
           MVKC+P+ GKYMACCLLYRGDVV KDV+SAIA IK+K++IQFVDWCPTGFKVG+NYQP T
Sbjct: 296 MVKCDPRHGKYMACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTGFKVGINYQPPT 355

Query: 432 QVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEA 253
            VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEA
Sbjct: 356 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 415

Query: 252 REDLAALEKDYEEAGMDTEVLHEDEPTE 169
           RED+AALEKDYEE G D+ V  EDE  E
Sbjct: 416 REDMAALEKDYEEVGTDS-VGEEDEEGE 442

>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
          Length = 452

 Score =  353 bits (907), Expect = 3e-97
 Identities = 168/212 (79%), Positives = 190/212 (89%)
 Frame = -3

Query: 792 LEYDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQ 613
           L +DGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQL+VSEITNACF+P NQ
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQ 301

Query: 612 MVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPST 433
           MVKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 432 QVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEA 253
            VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 252 REDLAALEKDYEEAGMDTEVLHEDEPTENAEF 157
           REDLAALEKDYEE G+D+    E E  E  E+
Sbjct: 422 REDLAALEKDYEEVGVDSADA-EGEEEEGDEY 452

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,013,504
Number of Sequences: 369166
Number of extensions: 1920057
Number of successful extensions: 5258
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5025
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 11244607825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00242

  1. Dr_sW_007_F10
  2. Dr_sW_006_O13
  3. Dr_sW_014_E10
  4. Dr_sW_024_A16
  5. Dr_sW_022_O24
  6. Dr_sW_024_O08
  7. Dr_sW_018_C24
  8. Dr_sW_021_D21
  9. Dr_sW_025_P18
  10. Dr_sW_019_E16