Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_A16
(143 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1 28 6.4
sp|Q9X170|YD49_THEMA Hypothetical UPF0118 protein TM1349 28 8.4
>sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1
Length = 326
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 7 MTKMTSGNILKHQMVPNLNITENKYIN 87
MTKM + NI+ + M N+ NKYIN
Sbjct: 214 MTKMNNNNIIMNYMNNMNNMRNNKYIN 240
>sp|Q9X170|YD49_THEMA Hypothetical UPF0118 protein TM1349
Length = 338
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 116 LKKMSLVVKKLIYLFSVIFKFGTIWCFKIFPDVIFVIV 3
+K+ +++ + F+ ++ + FKIFPDV VIV
Sbjct: 1 MKEFRKILEDKAFFFTTLYILISFLVFKIFPDVFAVIV 38
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,227,920
Number of Sequences: 369166
Number of extensions: 207181
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 68,354,980
effective HSP length: 21
effective length of database: 64,475,545
effective search space used: 1676364170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)