Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_O13
(838 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 377 e-104
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 377 e-104
sp|P52273|TBA_BOMMO Tubulin alpha chain 377 e-104
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 377 e-104
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 376 e-104
sp|Q91060|TBA_NOTVI Tubulin alpha chain 375 e-104
sp|P30436|TBA_ONCKE Tubulin alpha chain 375 e-103
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 375 e-103
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 375 e-103
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 374 e-103
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 377 bits (968), Expect = e-104
Identities = 179/219 (81%), Positives = 201/219 (91%)
Frame = +2
Query: 14 VGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSE 193
+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSVSE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVSE 290
Query: 194 ITNACFDPYNQMVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTG 373
ITNACF+P NQMVKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTG 350
Query: 374 FKVGLNYQPSTQVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVG 553
FKVG+NYQP T VPGGDLA+V R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 554 EGMEEGEFSEAREDLAALEKDYEEAGMDTEVLHEDEPTE 670
EGMEEGEF+EAREDLAALEKDYEE G+D+ +E E
Sbjct: 411 EGMEEGEFTEAREDLAALEKDYEEVGVDSADAEGEEEGE 449
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 377 bits (967), Expect = e-104
Identities = 177/209 (84%), Positives = 198/209 (94%)
Frame = +2
Query: 14 VGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSE 193
+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+E
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 290
Query: 194 ITNACFDPYNQMVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTG 373
ITNACF+P NQMVKC+P+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 374 FKVGLNYQPSTQVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVG 553
FKVG+NYQP T VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 554 EGMEEGEFSEAREDLAALEKDYEEAGMDT 640
EGMEEGEFSEAREDLAALEKDYEE GMD+
Sbjct: 411 EGMEEGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 377 bits (967), Expect = e-104
Identities = 177/209 (84%), Positives = 198/209 (94%)
Frame = +2
Query: 14 VGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSE 193
+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+E
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 290
Query: 194 ITNACFDPYNQMVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTG 373
ITNACF+P NQMVKC+P+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 374 FKVGLNYQPSTQVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVG 553
FKVG+NYQP T VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 554 EGMEEGEFSEAREDLAALEKDYEEAGMDT 640
EGMEEGEFSEAREDLAALEKDYEE GMD+
Sbjct: 411 EGMEEGEFSEAREDLAALEKDYEEVGMDS 439
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 377 bits (967), Expect = e-104
Identities = 181/223 (81%), Positives = 203/223 (91%)
Frame = +2
Query: 14 VGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSE 193
+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISS+KA HEQL+VSE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSEKAYHEQLTVSE 290
Query: 194 ITNACFDPYNQMVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTG 373
ITN CF+P NQMVKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTG
Sbjct: 291 ITNTCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTG 350
Query: 374 FKVGLNYQPSTQVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVG 553
FKVG+NYQP T VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 554 EGMEEGEFSEAREDLAALEKDYEEAGMDTEVLHEDEPTENAEF 682
EGMEEGEFSEAREDLAALEKDYEE G+D+ E + T EF
Sbjct: 411 EGMEEGEFSEAREDLAALEKDYEEVGLDST---EADDTAGEEF 450
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 376 bits (965), Expect = e-104
Identities = 177/209 (84%), Positives = 197/209 (94%)
Frame = +2
Query: 14 VGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSE 193
+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+E
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 290
Query: 194 ITNACFDPYNQMVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTG 373
ITNACF+P NQMVKC+P+ GKYMACCLLYRGDVV KDV++AIANIK+K+ IQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTG 350
Query: 374 FKVGLNYQPSTQVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVG 553
FKVG+NYQP T VPG DLA+V R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 554 EGMEEGEFSEAREDLAALEKDYEEAGMDT 640
EGMEEGEF+EAREDLAALEKDYEE GMD+
Sbjct: 411 EGMEEGEFTEAREDLAALEKDYEEVGMDS 439
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 375 bits (964), Expect = e-104
Identities = 178/219 (81%), Positives = 201/219 (91%)
Frame = +2
Query: 14 VGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSE 193
+ QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV+E
Sbjct: 231 ISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 290
Query: 194 ITNACFDPYNQMVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTG 373
ITNACF+P NQMVKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTG 350
Query: 374 FKVGLNYQPSTQVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVG 553
FKVG+NYQP T VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 554 EGMEEGEFSEAREDLAALEKDYEEAGMDTEVLHEDEPTE 670
EGMEEGEFSEARED+AALEKDYEE G+D+ EDE E
Sbjct: 411 EGMEEGEFSEAREDMAALEKDYEEVGLDSYEGEEDEGEE 449
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 375 bits (962), Expect = e-103
Identities = 180/219 (82%), Positives = 202/219 (92%)
Frame = +2
Query: 14 VGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSE 193
+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV++
Sbjct: 225 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAD 284
Query: 194 ITNACFDPYNQMVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTG 373
ITNACF+P NQMVKC+P+ GKYMACCLLYRGDVV KDV+SAIA IK+K++IQFVDWCPTG
Sbjct: 285 ITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTG 344
Query: 374 FKVGLNYQPSTQVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVG 553
FKVG+NYQP T VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVG
Sbjct: 345 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 404
Query: 554 EGMEEGEFSEAREDLAALEKDYEEAGMDTEVLHEDEPTE 670
EGMEEGEFSEARED+AALEKDYEE G D+ V EDE E
Sbjct: 405 EGMEEGEFSEAREDMAALEKDYEEVGTDS-VGEEDEEGE 442
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 375 bits (962), Expect = e-103
Identities = 180/223 (80%), Positives = 202/223 (90%)
Frame = +2
Query: 14 VGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSE 193
+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQL+VSE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSE 290
Query: 194 ITNACFDPYNQMVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTG 373
ITNACF+P NQMVKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K+ IQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 374 FKVGLNYQPSTQVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVG 553
FKVG+NYQP T VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 554 EGMEEGEFSEAREDLAALEKDYEEAGMDTEVLHEDEPTENAEF 682
EGMEEGEFSEAREDLAALEKDYEE G+D+ E E E E+
Sbjct: 411 EGMEEGEFSEAREDLAALEKDYEEVGVDSADA-EGEEEEGDEY 452
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 375 bits (962), Expect = e-103
Identities = 177/219 (80%), Positives = 200/219 (91%)
Frame = +2
Query: 14 VGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSE 193
+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV+E
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 290
Query: 194 ITNACFDPYNQMVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTG 373
ITNACF+P NQMVKC+P+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 374 FKVGLNYQPSTQVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVG 553
FKVG+NYQP T VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 554 EGMEEGEFSEAREDLAALEKDYEEAGMDTEVLHEDEPTE 670
EGMEEGEFSEAREDLAALEKDYEE G+D+ +E E
Sbjct: 411 EGMEEGEFSEAREDLAALEKDYEEVGVDSVEAEAEEGEE 449
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 374 bits (961), Expect = e-103
Identities = 179/223 (80%), Positives = 202/223 (90%)
Frame = +2
Query: 14 VGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSE 193
+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HE LSV+E
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAE 290
Query: 194 ITNACFDPYNQMVKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTG 373
ITNACF+P NQMVKC+P+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 374 FKVGLNYQPSTQVPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVG 553
FKVG+NYQP T VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 554 EGMEEGEFSEAREDLAALEKDYEEAGMDTEVLHEDEPTENAEF 682
EGMEEGEFSEAREDLAALEKDYEE G+D+ E E E E+
Sbjct: 411 EGMEEGEFSEAREDLAALEKDYEEVGVDSV---EGEAEEGEEY 450
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,215,070
Number of Sequences: 369166
Number of extensions: 1700660
Number of successful extensions: 4829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4593
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)