Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_F10
(654 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91060|TBA_NOTVI Tubulin alpha chain 335 8e-92
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 334 1e-91
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 333 2e-91
sp|P52273|TBA_BOMMO Tubulin alpha chain 333 2e-91
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 333 2e-91
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 333 3e-91
sp|Q06331|TBA_OCTDO Tubulin alpha chain 332 4e-91
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 332 5e-91
sp|P30436|TBA_ONCKE Tubulin alpha chain 332 7e-91
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 332 7e-91
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 335 bits (858), Expect = 8e-92
Identities = 156/195 (80%), Positives = 178/195 (91%)
Frame = +1
Query: 1 FQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNPKEGKYMA 180
FQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV+EITNACF+P NQMVKC+P+ GKYMA
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMA 314
Query: 181 CCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGDLAQVKRS 360
CCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGDLA+V+R+
Sbjct: 315 CCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRA 374
Query: 361 LCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 540
+CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEE
Sbjct: 375 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
Query: 541 AGMDTEVLHEDEPTE 585
G+D+ EDE E
Sbjct: 435 VGLDSYEGEEDEGEE 449
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 334 bits (856), Expect = 1e-91
Identities = 156/195 (80%), Positives = 177/195 (90%)
Frame = +1
Query: 1 FQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNPKEGKYMA 180
FQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSVSEITNACF+P NQMVKC+P+ GKYMA
Sbjct: 255 FQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMA 314
Query: 181 CCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGDLAQVKRS 360
CCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGDLA+V R+
Sbjct: 315 CCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRA 374
Query: 361 LCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 540
+CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEF+EAREDLAALEKDYEE
Sbjct: 375 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 434
Query: 541 AGMDTEVLHEDEPTE 585
G+D+ +E E
Sbjct: 435 VGVDSADAEGEEEGE 449
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 333 bits (855), Expect = 2e-91
Identities = 154/185 (83%), Positives = 174/185 (94%)
Frame = +1
Query: 1 FQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNPKEGKYMA 180
FQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQMVKC+P+ GKYMA
Sbjct: 255 FQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMA 314
Query: 181 CCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGDLAQVKRS 360
CC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T VPGGDLA+V+R+
Sbjct: 315 CCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 374
Query: 361 LCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 540
+CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 541 AGMDT 555
GMD+
Sbjct: 435 VGMDS 439
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 333 bits (855), Expect = 2e-91
Identities = 154/185 (83%), Positives = 174/185 (94%)
Frame = +1
Query: 1 FQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNPKEGKYMA 180
FQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQMVKC+P+ GKYMA
Sbjct: 255 FQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMA 314
Query: 181 CCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGDLAQVKRS 360
CC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T VPGGDLA+V+R+
Sbjct: 315 CCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 374
Query: 361 LCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 540
+CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 541 AGMDT 555
GMD+
Sbjct: 435 VGMDS 439
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 333 bits (855), Expect = 2e-91
Identities = 158/199 (79%), Positives = 179/199 (89%)
Frame = +1
Query: 1 FQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNPKEGKYMA 180
FQTNLVPYPRIHFPLVTYAPVISS+KA HEQL+VSEITN CF+P NQMVKC+P+ GKYMA
Sbjct: 255 FQTNLVPYPRIHFPLVTYAPVISSEKAYHEQLTVSEITNTCFEPANQMVKCDPRHGKYMA 314
Query: 181 CCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGDLAQVKRS 360
CCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGDLA+V+R+
Sbjct: 315 CCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 374
Query: 361 LCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 540
+CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 541 AGMDTEVLHEDEPTENAEF 597
G+D+ E + T EF
Sbjct: 435 VGLDST---EADDTAGEEF 450
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 333 bits (853), Expect = 3e-91
Identities = 154/185 (83%), Positives = 173/185 (93%)
Frame = +1
Query: 1 FQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNPKEGKYMA 180
FQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQMVKC+P+ GKYMA
Sbjct: 255 FQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMA 314
Query: 181 CCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGDLAQVKRS 360
CCLLYRGDVV KDV++AIANIK+K+ IQFVDWCPTGFKVG+NYQP T VPG DLA+V R+
Sbjct: 315 CCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRA 374
Query: 361 LCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 540
+CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEF+EAREDLAALEKDYEE
Sbjct: 375 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 434
Query: 541 AGMDT 555
GMD+
Sbjct: 435 VGMDS 439
>sp|Q06331|TBA_OCTDO Tubulin alpha chain
Length = 451
Score = 332 bits (852), Expect = 4e-91
Identities = 151/192 (78%), Positives = 178/192 (92%)
Frame = +1
Query: 1 FQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNPKEGKYMA 180
FQTNLVPYPRIHFPLVTYAP+IS++KA HEQL+V+E+T+ACF+P NQMVKC+P+ GKYMA
Sbjct: 255 FQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPRHGKYMA 314
Query: 181 CCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGDLAQVKRS 360
CC+LYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGDLA+V+R+
Sbjct: 315 CCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 374
Query: 361 LCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 540
+CMLSNTTA+ EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 541 AGMDTEVLHEDE 576
G+DT E+E
Sbjct: 435 VGLDTFEAEEEE 446
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 332 bits (851), Expect = 5e-91
Identities = 153/185 (82%), Positives = 174/185 (94%)
Frame = +1
Query: 1 FQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNPKEGKYMA 180
FQTNLVPYPRIHFPL TYAPVIS++KA HEQLSVSEITNACF+P NQMVKC+P+ GKYMA
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMA 314
Query: 181 CCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGDLAQVKRS 360
CCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGDLA+V+R+
Sbjct: 315 CCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 374
Query: 361 LCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 540
+CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEE
Sbjct: 375 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
Query: 541 AGMDT 555
G+D+
Sbjct: 435 VGVDS 439
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 332 bits (850), Expect = 7e-91
Identities = 157/195 (80%), Positives = 178/195 (91%)
Frame = +1
Query: 1 FQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNPKEGKYMA 180
FQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV++ITNACF+P NQMVKC+P+ GKYMA
Sbjct: 249 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVADITNACFEPANQMVKCDPRHGKYMA 308
Query: 181 CCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGDLAQVKRS 360
CCLLYRGDVV KDV+SAIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGDLA+V+R+
Sbjct: 309 CCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 368
Query: 361 LCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 540
+CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEE
Sbjct: 369 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 428
Query: 541 AGMDTEVLHEDEPTE 585
G D+ V EDE E
Sbjct: 429 VGTDS-VGEEDEEGE 442
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 332 bits (850), Expect = 7e-91
Identities = 157/199 (78%), Positives = 178/199 (89%)
Frame = +1
Query: 1 FQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNPKEGKYMA 180
FQTNLVPYPRIHFPL TYAPVIS++KA HEQL+VSEITNACF+P NQMVKC+P+ GKYMA
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMA 314
Query: 181 CCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGDLAQVKRS 360
CCLLYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T VPGGDLA+V+R+
Sbjct: 315 CCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 374
Query: 361 LCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 540
+CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 541 AGMDTEVLHEDEPTENAEF 597
G+D+ E E E E+
Sbjct: 435 VGVDSADA-EGEEEEGDEY 452
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,268,266
Number of Sequences: 369166
Number of extensions: 1441090
Number of successful extensions: 4425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4192
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5413810770
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)