Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_E10
(841 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91060|TBA_NOTVI Tubulin alpha chain 348 1e-95
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 347 2e-95
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 347 3e-95
sp|P52273|TBA_BOMMO Tubulin alpha chain 347 3e-95
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 347 3e-95
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 346 5e-95
sp|Q06331|TBA_OCTDO Tubulin alpha chain 345 7e-95
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 345 9e-95
sp|P30436|TBA_ONCKE Tubulin alpha chain 345 1e-94
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 345 1e-94
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 348 bits (892), Expect = 1e-95
Identities = 163/202 (80%), Positives = 185/202 (91%)
Frame = -2
Query: 714 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNP 535
LNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV+EITNACF+P NQMVKC+P
Sbjct: 248 LNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDP 307
Query: 534 KEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGD 355
+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGD
Sbjct: 308 RHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGD 367
Query: 354 LAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAA 175
LA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEARED+AA
Sbjct: 368 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427
Query: 174 LEKDYEEAGMDTEVLHEDEPTE 109
LEKDYEE G+D+ EDE E
Sbjct: 428 LEKDYEEVGLDSYEGEEDEGEE 449
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 347 bits (890), Expect = 2e-95
Identities = 163/202 (80%), Positives = 184/202 (91%)
Frame = -2
Query: 714 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNP 535
LNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSVSEITNACF+P NQMVKC+P
Sbjct: 248 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDP 307
Query: 534 KEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGD 355
+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGD
Sbjct: 308 RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGD 367
Query: 354 LAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAA 175
LA+V R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEF+EAREDLAA
Sbjct: 368 LAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAA 427
Query: 174 LEKDYEEAGMDTEVLHEDEPTE 109
LEKDYEE G+D+ +E E
Sbjct: 428 LEKDYEEVGVDSADAEGEEEGE 449
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 347 bits (889), Expect = 3e-95
Identities = 161/192 (83%), Positives = 181/192 (94%)
Frame = -2
Query: 714 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNP 535
LNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQMVKC+P
Sbjct: 248 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDP 307
Query: 534 KEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGD 355
+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T VPGGD
Sbjct: 308 RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 367
Query: 354 LAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAA 175
LA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 174 LEKDYEEAGMDT 139
LEKDYEE GMD+
Sbjct: 428 LEKDYEEVGMDS 439
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 347 bits (889), Expect = 3e-95
Identities = 161/192 (83%), Positives = 181/192 (94%)
Frame = -2
Query: 714 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNP 535
LNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQMVKC+P
Sbjct: 248 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDP 307
Query: 534 KEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGD 355
+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T VPGGD
Sbjct: 308 RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 367
Query: 354 LAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAA 175
LA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 174 LEKDYEEAGMDT 139
LEKDYEE GMD+
Sbjct: 428 LEKDYEEVGMDS 439
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 347 bits (889), Expect = 3e-95
Identities = 165/206 (80%), Positives = 186/206 (90%)
Frame = -2
Query: 714 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNP 535
LNVDLTEFQTNLVPYPRIHFPLVTYAPVISS+KA HEQL+VSEITN CF+P NQMVKC+P
Sbjct: 248 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSEKAYHEQLTVSEITNTCFEPANQMVKCDP 307
Query: 534 KEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGD 355
+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGD
Sbjct: 308 RHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGD 367
Query: 354 LAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAA 175
LA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 174 LEKDYEEAGMDTEVLHEDEPTENAEF 97
LEKDYEE G+D+ E + T EF
Sbjct: 428 LEKDYEEVGLDST---EADDTAGEEF 450
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 346 bits (887), Expect = 5e-95
Identities = 161/192 (83%), Positives = 180/192 (93%)
Frame = -2
Query: 714 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNP 535
LNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQMVKC+P
Sbjct: 248 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDP 307
Query: 534 KEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGD 355
+ GKYMACCLLYRGDVV KDV++AIANIK+K+ IQFVDWCPTGFKVG+NYQP T VPG D
Sbjct: 308 RHGKYMACCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGAD 367
Query: 354 LAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAA 175
LA+V R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEF+EAREDLAA
Sbjct: 368 LAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAA 427
Query: 174 LEKDYEEAGMDT 139
LEKDYEE GMD+
Sbjct: 428 LEKDYEEVGMDS 439
>sp|Q06331|TBA_OCTDO Tubulin alpha chain
Length = 451
Score = 345 bits (886), Expect = 7e-95
Identities = 158/199 (79%), Positives = 185/199 (92%)
Frame = -2
Query: 714 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNP 535
LNVDLTEFQTNLVPYPRIHFPLVTYAP+IS++KA HEQL+V+E+T+ACF+P NQMVKC+P
Sbjct: 248 LNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDP 307
Query: 534 KEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGD 355
+ GKYMACC+LYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGD
Sbjct: 308 RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGD 367
Query: 354 LAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAA 175
LA+V+R++CMLSNTTA+ EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 174 LEKDYEEAGMDTEVLHEDE 118
LEKDYEE G+DT E+E
Sbjct: 428 LEKDYEEVGLDTFEAEEEE 446
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 345 bits (885), Expect = 9e-95
Identities = 160/192 (83%), Positives = 181/192 (94%)
Frame = -2
Query: 714 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNP 535
LNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSVSEITNACF+P NQMVKC+P
Sbjct: 248 LNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDP 307
Query: 534 KEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGD 355
+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGD
Sbjct: 308 RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGD 367
Query: 354 LAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAA 175
LA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEARED+AA
Sbjct: 368 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 427
Query: 174 LEKDYEEAGMDT 139
LEKDYEE G+D+
Sbjct: 428 LEKDYEEVGVDS 439
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 345 bits (884), Expect = 1e-94
Identities = 164/202 (81%), Positives = 185/202 (91%)
Frame = -2
Query: 714 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNP 535
LNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV++ITNACF+P NQMVKC+P
Sbjct: 242 LNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVADITNACFEPANQMVKCDP 301
Query: 534 KEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGD 355
+ GKYMACCLLYRGDVV KDV+SAIA IK+K++IQFVDWCPTGFKVG+NYQP T VPGGD
Sbjct: 302 RHGKYMACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGD 361
Query: 354 LAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAA 175
LA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEARED+AA
Sbjct: 362 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA 421
Query: 174 LEKDYEEAGMDTEVLHEDEPTE 109
LEKDYEE G D+ V EDE E
Sbjct: 422 LEKDYEEVGTDS-VGEEDEEGE 442
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 345 bits (884), Expect = 1e-94
Identities = 164/206 (79%), Positives = 185/206 (89%)
Frame = -2
Query: 714 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQMVKCNP 535
LNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQL+VSEITNACF+P NQMVKC+P
Sbjct: 248 LNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDP 307
Query: 534 KEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQVPGGD 355
+ GKYMACCLLYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T VPGGD
Sbjct: 308 RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 367
Query: 354 LAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAA 175
LA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 174 LEKDYEEAGMDTEVLHEDEPTENAEF 97
LEKDYEE G+D+ E E E E+
Sbjct: 428 LEKDYEEVGVDSADA-EGEEEEGDEY 452
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,992,793
Number of Sequences: 369166
Number of extensions: 1647531
Number of successful extensions: 4785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4552
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)