Planaria EST Database

DrC_00234

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00234
         (1003 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P33674|CSK21_RABIT  Casein kinase II, alpha chain (CK II)      120   5e-27
sp|P19139|CSK21_RAT  Casein kinase II, alpha chain (CK II)        120   5e-27
sp|P68400|CSK21_HUMAN  Casein kinase II, alpha chain (CK II)...   120   5e-27
sp|P21868|CSK21_CHICK  Casein kinase II, alpha chain (CK II)      119   2e-26
sp|P28020|CSK22_XENLA  Casein kinase II, alpha' chain (CK II)     118   2e-26
sp|Q60737|CSK21_MOUSE  Casein kinase II, alpha chain (CK II)      117   5e-26
sp|O76484|CSK2A_SPOFR  Casein kinase II, alpha chain (CK II ...   115   1e-25
sp|O54833|CSK22_MOUSE  Casein kinase II, alpha' chain (CK II)     111   4e-24
sp|P19784|CSK22_HUMAN  Casein kinase II, alpha' chain (CK II)     111   4e-24
sp|P20427|CSK22_BOVIN  Casein kinase II, alpha' chain (CK II)     111   4e-24

>sp|P33674|CSK21_RABIT Casein kinase II, alpha chain (CK II)
          Length = 391

 Score =  120 bits (302), Expect = 5e-27
 Identities = 53/74 (71%), Positives = 67/74 (90%)
 Frame = +1

Query: 1   YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
           Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+E
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 320

Query: 181 HNYFYTIVQEQSAM 222
           H YFYT+V++Q+ M
Sbjct: 321 HPYFYTVVKDQARM 334

>sp|P19139|CSK21_RAT Casein kinase II, alpha chain (CK II)
          Length = 391

 Score =  120 bits (302), Expect = 5e-27
 Identities = 53/74 (71%), Positives = 67/74 (90%)
 Frame = +1

Query: 1   YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
           Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+E
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 320

Query: 181 HNYFYTIVQEQSAM 222
           H YFYT+V++Q+ M
Sbjct: 321 HPYFYTVVKDQARM 334

>sp|P68400|CSK21_HUMAN Casein kinase II, alpha chain (CK II)
 sp|P68399|CSK21_BOVIN Casein kinase II, alpha chain (CK II)
          Length = 391

 Score =  120 bits (302), Expect = 5e-27
 Identities = 53/74 (71%), Positives = 67/74 (90%)
 Frame = +1

Query: 1   YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
           Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+E
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 320

Query: 181 HNYFYTIVQEQSAM 222
           H YFYT+V++Q+ M
Sbjct: 321 HPYFYTVVKDQARM 334

>sp|P21868|CSK21_CHICK Casein kinase II, alpha chain (CK II)
          Length = 391

 Score =  119 bits (297), Expect = 2e-26
 Identities = 53/74 (71%), Positives = 66/74 (89%)
 Frame = +1

Query: 1   YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
           Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+E
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 320

Query: 181 HNYFYTIVQEQSAM 222
           H YFY IV++Q+ M
Sbjct: 321 HPYFYPIVKDQARM 334

>sp|P28020|CSK22_XENLA Casein kinase II, alpha' chain (CK II)
          Length = 392

 Score =  118 bits (296), Expect = 2e-26
 Identities = 53/74 (71%), Positives = 66/74 (89%)
 Frame = +1

Query: 1   YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
           Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA++
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQTRLTAREAMD 320

Query: 181 HNYFYTIVQEQSAM 222
           H YFY IV++QS M
Sbjct: 321 HPYFYPIVKDQSRM 334

>sp|Q60737|CSK21_MOUSE Casein kinase II, alpha chain (CK II)
          Length = 391

 Score =  117 bits (293), Expect = 5e-26
 Identities = 52/74 (70%), Positives = 65/74 (87%)
 Frame = +1

Query: 1   YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
           Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T +EA+E
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTVREAME 320

Query: 181 HNYFYTIVQEQSAM 222
           H +FYT+V+ Q+ M
Sbjct: 321 HPFFYTVVKNQARM 334

>sp|O76484|CSK2A_SPOFR Casein kinase II, alpha chain (CK II alpha subunit)
          Length = 353

 Score =  115 bits (289), Expect = 1e-25
 Identities = 52/74 (70%), Positives = 64/74 (86%)
 Frame = +1

Query: 1   YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
           Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLD+LLRYDH ER T++EA++
Sbjct: 261 YHIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDRLLRYDHYERYTAREAMD 320

Query: 181 HNYFYTIVQEQSAM 222
           H YFY IV+EQ  M
Sbjct: 321 HPYFYPIVKEQGRM 334

>sp|O54833|CSK22_MOUSE Casein kinase II, alpha' chain (CK II)
          Length = 350

 Score =  111 bits (277), Expect = 4e-24
 Identities = 48/72 (66%), Positives = 63/72 (87%)
 Frame = +1

Query: 1   YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
           Y I+LDP +N+ILG+HSRKRWE F++ +N+ L+S EALD LDKLLRYDHQ+R+T+KEA+E
Sbjct: 262 YHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAME 321

Query: 181 HNYFYTIVQEQS 216
           H YFY +V+EQS
Sbjct: 322 HPYFYPVVKEQS 333

>sp|P19784|CSK22_HUMAN Casein kinase II, alpha' chain (CK II)
          Length = 350

 Score =  111 bits (277), Expect = 4e-24
 Identities = 48/72 (66%), Positives = 63/72 (87%)
 Frame = +1

Query: 1   YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
           Y I+LDP +N+ILG+HSRKRWE F++ +N+ L+S EALD LDKLLRYDHQ+R+T+KEA+E
Sbjct: 262 YHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAME 321

Query: 181 HNYFYTIVQEQS 216
           H YFY +V+EQS
Sbjct: 322 HPYFYPVVKEQS 333

>sp|P20427|CSK22_BOVIN Casein kinase II, alpha' chain (CK II)
          Length = 350

 Score =  111 bits (277), Expect = 4e-24
 Identities = 48/72 (66%), Positives = 63/72 (87%)
 Frame = +1

Query: 1   YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
           Y I+LDP +N+ILG+HSRKRWE F++ +N+ L+S EALD LDKLLRYDHQ+R+T+KEA+E
Sbjct: 262 YHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAME 321

Query: 181 HNYFYTIVQEQS 216
           H YFY +V+EQS
Sbjct: 322 HPYFYPVVKEQS 333

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,979,502
Number of Sequences: 369166
Number of extensions: 1926699
Number of successful extensions: 6514
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6357
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10622565690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00234

  1. Dr_sW_023_N23
  2. Dr_sW_008_M11
  3. Dr_sW_006_M03
  4. Dr_sW_024_M19