Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_M19
(774 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33674|CSK21_RABIT Casein kinase II, alpha chain (CK II) 33 0.66
sp|P19139|CSK21_RAT Casein kinase II, alpha chain (CK II) 33 0.66
sp|P68400|CSK21_HUMAN Casein kinase II, alpha chain (CK II)... 33 0.66
sp|O54833|CSK22_MOUSE Casein kinase II, alpha' chain (CK II) 33 0.86
sp|P19784|CSK22_HUMAN Casein kinase II, alpha' chain (CK II) 33 0.86
sp|P21869|CSK22_CHICK Casein kinase II, alpha' chain (CK II) 33 0.86
sp|P20427|CSK22_BOVIN Casein kinase II, alpha' chain (CK II) 33 0.86
sp|P21868|CSK21_CHICK Casein kinase II, alpha chain (CK II) 32 2.5
sp|P28020|CSK22_XENLA Casein kinase II, alpha' chain (CK II) 32 2.5
sp|Q9VL78|FKB59_DROME FK506-binding protein 59 (Peptidyl-pr... 31 3.3
>sp|P33674|CSK21_RABIT Casein kinase II, alpha chain (CK II)
Length = 391
Score = 33.5 bits (75), Expect = 0.66
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +1
Query: 1 TSKEALEHNYFYTIVQEQSAM 63
T++EA+EH YFYT+V++Q+ M
Sbjct: 314 TAREAMEHPYFYTVVKDQARM 334
>sp|P19139|CSK21_RAT Casein kinase II, alpha chain (CK II)
Length = 391
Score = 33.5 bits (75), Expect = 0.66
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +1
Query: 1 TSKEALEHNYFYTIVQEQSAM 63
T++EA+EH YFYT+V++Q+ M
Sbjct: 314 TAREAMEHPYFYTVVKDQARM 334
>sp|P68400|CSK21_HUMAN Casein kinase II, alpha chain (CK II)
sp|P68399|CSK21_BOVIN Casein kinase II, alpha chain (CK II)
Length = 391
Score = 33.5 bits (75), Expect = 0.66
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +1
Query: 1 TSKEALEHNYFYTIVQEQSAM 63
T++EA+EH YFYT+V++Q+ M
Sbjct: 314 TAREAMEHPYFYTVVKDQARM 334
>sp|O54833|CSK22_MOUSE Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 33.1 bits (74), Expect = 0.86
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 1 TSKEALEHNYFYTIVQEQS 57
T+KEA+EH YFY +V+EQS
Sbjct: 315 TAKEAMEHPYFYPVVKEQS 333
>sp|P19784|CSK22_HUMAN Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 33.1 bits (74), Expect = 0.86
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 1 TSKEALEHNYFYTIVQEQS 57
T+KEA+EH YFY +V+EQS
Sbjct: 315 TAKEAMEHPYFYPVVKEQS 333
>sp|P21869|CSK22_CHICK Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 33.1 bits (74), Expect = 0.86
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 1 TSKEALEHNYFYTIVQEQS 57
T+KEA+EH YFY +V+EQS
Sbjct: 315 TAKEAMEHPYFYPVVKEQS 333
>sp|P20427|CSK22_BOVIN Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 33.1 bits (74), Expect = 0.86
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 1 TSKEALEHNYFYTIVQEQS 57
T+KEA+EH YFY +V+EQS
Sbjct: 315 TAKEAMEHPYFYPVVKEQS 333
>sp|P21868|CSK21_CHICK Casein kinase II, alpha chain (CK II)
Length = 391
Score = 31.6 bits (70), Expect = 2.5
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 1 TSKEALEHNYFYTIVQEQSAM 63
T++EA+EH YFY IV++Q+ M
Sbjct: 314 TAREAMEHPYFYPIVKDQARM 334
>sp|P28020|CSK22_XENLA Casein kinase II, alpha' chain (CK II)
Length = 392
Score = 31.6 bits (70), Expect = 2.5
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 1 TSKEALEHNYFYTIVQEQSAM 63
T++EA++H YFY IV++QS M
Sbjct: 314 TAREAMDHPYFYPIVKDQSRM 334
>sp|Q9VL78|FKB59_DROME FK506-binding protein 59 (Peptidyl-prolyl cis-trans isomerase)
(PPIase) (Rotamase) (dFKBP59)
Length = 439
Score = 31.2 bits (69), Expect = 3.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 566 KRTSPTHTHTFIINQSIKQTNTHTHAQLHTIHNQSTNQSQARQVC 432
K PT HT N+ +K+ TH+ + H +S + +A+Q C
Sbjct: 279 KNILPTTVHT---NEEVKKIKVATHSNIALCHQKSNDHFEAKQEC 320
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,840,091
Number of Sequences: 369166
Number of extensions: 1219731
Number of successful extensions: 3665
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3611
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)