Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_M11
(884 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33674|CSK21_RABIT Casein kinase II, alpha chain (CK II) 103 5e-22
sp|P19139|CSK21_RAT Casein kinase II, alpha chain (CK II) 103 5e-22
sp|P68400|CSK21_HUMAN Casein kinase II, alpha chain (CK II)... 103 5e-22
sp|P21868|CSK21_CHICK Casein kinase II, alpha chain (CK II) 102 2e-21
sp|P28020|CSK22_XENLA Casein kinase II, alpha' chain (CK II) 101 2e-21
sp|Q60737|CSK21_MOUSE Casein kinase II, alpha chain (CK II) 100 5e-21
sp|O76484|CSK2A_SPOFR Casein kinase II, alpha chain (CK II ... 99 2e-20
sp|O54833|CSK22_MOUSE Casein kinase II, alpha' chain (CK II) 97 8e-20
sp|P19784|CSK22_HUMAN Casein kinase II, alpha' chain (CK II) 97 8e-20
sp|P20427|CSK22_BOVIN Casein kinase II, alpha' chain (CK II) 97 8e-20
>sp|P33674|CSK21_RABIT Casein kinase II, alpha chain (CK II)
Length = 391
Score = 103 bits (258), Expect = 5e-22
Identities = 46/64 (71%), Positives = 58/64 (90%)
Frame = +2
Query: 2 EILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQE 181
+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+EH YFYT+V++
Sbjct: 271 DILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKD 330
Query: 182 QSAM 193
Q+ M
Sbjct: 331 QARM 334
>sp|P19139|CSK21_RAT Casein kinase II, alpha chain (CK II)
Length = 391
Score = 103 bits (258), Expect = 5e-22
Identities = 46/64 (71%), Positives = 58/64 (90%)
Frame = +2
Query: 2 EILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQE 181
+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+EH YFYT+V++
Sbjct: 271 DILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKD 330
Query: 182 QSAM 193
Q+ M
Sbjct: 331 QARM 334
>sp|P68400|CSK21_HUMAN Casein kinase II, alpha chain (CK II)
sp|P68399|CSK21_BOVIN Casein kinase II, alpha chain (CK II)
Length = 391
Score = 103 bits (258), Expect = 5e-22
Identities = 46/64 (71%), Positives = 58/64 (90%)
Frame = +2
Query: 2 EILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQE 181
+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+EH YFYT+V++
Sbjct: 271 DILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKD 330
Query: 182 QSAM 193
Q+ M
Sbjct: 331 QARM 334
>sp|P21868|CSK21_CHICK Casein kinase II, alpha chain (CK II)
Length = 391
Score = 102 bits (253), Expect = 2e-21
Identities = 46/64 (71%), Positives = 57/64 (89%)
Frame = +2
Query: 2 EILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQE 181
+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+EH YFY IV++
Sbjct: 271 DILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYPIVKD 330
Query: 182 QSAM 193
Q+ M
Sbjct: 331 QARM 334
>sp|P28020|CSK22_XENLA Casein kinase II, alpha' chain (CK II)
Length = 392
Score = 101 bits (252), Expect = 2e-21
Identities = 46/64 (71%), Positives = 57/64 (89%)
Frame = +2
Query: 2 EILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQE 181
+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA++H YFY IV++
Sbjct: 271 DILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQTRLTAREAMDHPYFYPIVKD 330
Query: 182 QSAM 193
QS M
Sbjct: 331 QSRM 334
>sp|Q60737|CSK21_MOUSE Casein kinase II, alpha chain (CK II)
Length = 391
Score = 100 bits (249), Expect = 5e-21
Identities = 45/64 (70%), Positives = 56/64 (87%)
Frame = +2
Query: 2 EILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQE 181
+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T +EA+EH +FYT+V+
Sbjct: 271 DILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTVREAMEHPFFYTVVKN 330
Query: 182 QSAM 193
Q+ M
Sbjct: 331 QARM 334
>sp|O76484|CSK2A_SPOFR Casein kinase II, alpha chain (CK II alpha subunit)
Length = 353
Score = 99.0 bits (245), Expect = 2e-20
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = +2
Query: 2 EILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQE 181
+ILGRHSRKRWERFV+ +NQ L+S EALDFLD+LLRYDH ER T++EA++H YFY IV+E
Sbjct: 271 DILGRHSRKRWERFVHSENQHLVSPEALDFLDRLLRYDHYERYTAREAMDHPYFYPIVKE 330
Query: 182 QSAM 193
Q M
Sbjct: 331 QGRM 334
>sp|O54833|CSK22_MOUSE Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 96.7 bits (239), Expect = 8e-20
Identities = 42/62 (67%), Positives = 55/62 (88%)
Frame = +2
Query: 2 EILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQE 181
+ILG+HSRKRWE F++ +N+ L+S EALD LDKLLRYDHQ+R+T+KEA+EH YFY +V+E
Sbjct: 272 DILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKE 331
Query: 182 QS 187
QS
Sbjct: 332 QS 333
>sp|P19784|CSK22_HUMAN Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 96.7 bits (239), Expect = 8e-20
Identities = 42/62 (67%), Positives = 55/62 (88%)
Frame = +2
Query: 2 EILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQE 181
+ILG+HSRKRWE F++ +N+ L+S EALD LDKLLRYDHQ+R+T+KEA+EH YFY +V+E
Sbjct: 272 DILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKE 331
Query: 182 QS 187
QS
Sbjct: 332 QS 333
>sp|P20427|CSK22_BOVIN Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 96.7 bits (239), Expect = 8e-20
Identities = 42/62 (67%), Positives = 55/62 (88%)
Frame = +2
Query: 2 EILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQE 181
+ILG+HSRKRWE F++ +N+ L+S EALD LDKLLRYDHQ+R+T+KEA+EH YFY +V+E
Sbjct: 272 DILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKE 331
Query: 182 QS 187
QS
Sbjct: 332 QS 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,638,060
Number of Sequences: 369166
Number of extensions: 1656261
Number of successful extensions: 5811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5655
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)