Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_M03
(973 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33674|CSK21_RABIT Casein kinase II, alpha chain (CK II) 120 4e-27
sp|P19139|CSK21_RAT Casein kinase II, alpha chain (CK II) 120 4e-27
sp|P68400|CSK21_HUMAN Casein kinase II, alpha chain (CK II)... 120 4e-27
sp|P21868|CSK21_CHICK Casein kinase II, alpha chain (CK II) 119 2e-26
sp|P28020|CSK22_XENLA Casein kinase II, alpha' chain (CK II) 118 2e-26
sp|Q60737|CSK21_MOUSE Casein kinase II, alpha chain (CK II) 117 5e-26
sp|O76484|CSK2A_SPOFR Casein kinase II, alpha chain (CK II ... 115 1e-25
sp|O54833|CSK22_MOUSE Casein kinase II, alpha' chain (CK II) 111 4e-24
sp|P19784|CSK22_HUMAN Casein kinase II, alpha' chain (CK II) 111 4e-24
sp|P20427|CSK22_BOVIN Casein kinase II, alpha' chain (CK II) 111 4e-24
>sp|P33674|CSK21_RABIT Casein kinase II, alpha chain (CK II)
Length = 391
Score = 120 bits (302), Expect = 4e-27
Identities = 53/74 (71%), Positives = 67/74 (90%)
Frame = +1
Query: 1 YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+E
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 320
Query: 181 HNYFYTIVQEQSAM 222
H YFYT+V++Q+ M
Sbjct: 321 HPYFYTVVKDQARM 334
>sp|P19139|CSK21_RAT Casein kinase II, alpha chain (CK II)
Length = 391
Score = 120 bits (302), Expect = 4e-27
Identities = 53/74 (71%), Positives = 67/74 (90%)
Frame = +1
Query: 1 YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+E
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 320
Query: 181 HNYFYTIVQEQSAM 222
H YFYT+V++Q+ M
Sbjct: 321 HPYFYTVVKDQARM 334
>sp|P68400|CSK21_HUMAN Casein kinase II, alpha chain (CK II)
sp|P68399|CSK21_BOVIN Casein kinase II, alpha chain (CK II)
Length = 391
Score = 120 bits (302), Expect = 4e-27
Identities = 53/74 (71%), Positives = 67/74 (90%)
Frame = +1
Query: 1 YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+E
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 320
Query: 181 HNYFYTIVQEQSAM 222
H YFYT+V++Q+ M
Sbjct: 321 HPYFYTVVKDQARM 334
>sp|P21868|CSK21_CHICK Casein kinase II, alpha chain (CK II)
Length = 391
Score = 119 bits (297), Expect = 2e-26
Identities = 53/74 (71%), Positives = 66/74 (89%)
Frame = +1
Query: 1 YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA+E
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 320
Query: 181 HNYFYTIVQEQSAM 222
H YFY IV++Q+ M
Sbjct: 321 HPYFYPIVKDQARM 334
>sp|P28020|CSK22_XENLA Casein kinase II, alpha' chain (CK II)
Length = 392
Score = 118 bits (296), Expect = 2e-26
Identities = 53/74 (71%), Positives = 66/74 (89%)
Frame = +1
Query: 1 YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T++EA++
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQTRLTAREAMD 320
Query: 181 HNYFYTIVQEQSAM 222
H YFY IV++QS M
Sbjct: 321 HPYFYPIVKDQSRM 334
>sp|Q60737|CSK21_MOUSE Casein kinase II, alpha chain (CK II)
Length = 391
Score = 117 bits (293), Expect = 5e-26
Identities = 52/74 (70%), Positives = 65/74 (87%)
Frame = +1
Query: 1 YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLDKLLRYDHQ R+T +EA+E
Sbjct: 261 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTVREAME 320
Query: 181 HNYFYTIVQEQSAM 222
H +FYT+V+ Q+ M
Sbjct: 321 HPFFYTVVKNQARM 334
>sp|O76484|CSK2A_SPOFR Casein kinase II, alpha chain (CK II alpha subunit)
Length = 353
Score = 115 bits (289), Expect = 1e-25
Identities = 52/74 (70%), Positives = 64/74 (86%)
Frame = +1
Query: 1 YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
Y IELDP++N+ILGRHSRKRWERFV+ +NQ L+S EALDFLD+LLRYDH ER T++EA++
Sbjct: 261 YHIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDRLLRYDHYERYTAREAMD 320
Query: 181 HNYFYTIVQEQSAM 222
H YFY IV+EQ M
Sbjct: 321 HPYFYPIVKEQGRM 334
>sp|O54833|CSK22_MOUSE Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 111 bits (277), Expect = 4e-24
Identities = 48/72 (66%), Positives = 63/72 (87%)
Frame = +1
Query: 1 YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
Y I+LDP +N+ILG+HSRKRWE F++ +N+ L+S EALD LDKLLRYDHQ+R+T+KEA+E
Sbjct: 262 YHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAME 321
Query: 181 HNYFYTIVQEQS 216
H YFY +V+EQS
Sbjct: 322 HPYFYPVVKEQS 333
>sp|P19784|CSK22_HUMAN Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 111 bits (277), Expect = 4e-24
Identities = 48/72 (66%), Positives = 63/72 (87%)
Frame = +1
Query: 1 YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
Y I+LDP +N+ILG+HSRKRWE F++ +N+ L+S EALD LDKLLRYDHQ+R+T+KEA+E
Sbjct: 262 YHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAME 321
Query: 181 HNYFYTIVQEQS 216
H YFY +V+EQS
Sbjct: 322 HPYFYPVVKEQS 333
>sp|P20427|CSK22_BOVIN Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 111 bits (277), Expect = 4e-24
Identities = 48/72 (66%), Positives = 63/72 (87%)
Frame = +1
Query: 1 YEIELDPKYNEILGRHSRKRWERFVNVDNQLLISNEALDFLDKLLRYDHQERITSKEALE 180
Y I+LDP +N+ILG+HSRKRWE F++ +N+ L+S EALD LDKLLRYDHQ+R+T+KEA+E
Sbjct: 262 YHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAME 321
Query: 181 HNYFYTIVQEQS 216
H YFY +V+EQS
Sbjct: 322 HPYFYPVVKEQS 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,733,864
Number of Sequences: 369166
Number of extensions: 1869026
Number of successful extensions: 6225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6069
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10144071740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)