Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_N23
(586 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33674|CSK21_RABIT Casein kinase II, alpha chain (CK II) 74 3e-13
sp|P19139|CSK21_RAT Casein kinase II, alpha chain (CK II) 74 3e-13
sp|P68400|CSK21_HUMAN Casein kinase II, alpha chain (CK II)... 74 3e-13
sp|P21868|CSK21_CHICK Casein kinase II, alpha chain (CK II) 72 1e-12
sp|P28020|CSK22_XENLA Casein kinase II, alpha' chain (CK II) 72 1e-12
sp|O54833|CSK22_MOUSE Casein kinase II, alpha' chain (CK II) 70 3e-12
sp|P19784|CSK22_HUMAN Casein kinase II, alpha' chain (CK II) 70 3e-12
sp|P20427|CSK22_BOVIN Casein kinase II, alpha' chain (CK II) 70 3e-12
sp|Q60737|CSK21_MOUSE Casein kinase II, alpha chain (CK II) 70 3e-12
sp|P21869|CSK22_CHICK Casein kinase II, alpha' chain (CK II) 69 9e-12
>sp|P33674|CSK21_RABIT Casein kinase II, alpha chain (CK II)
Length = 391
Score = 73.9 bits (180), Expect = 3e-13
Identities = 32/47 (68%), Positives = 42/47 (89%)
Frame = +3
Query: 12 DNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQEQSAM 152
+NQ L+S EALDFLDKLLRYDHQ R+T++EA+EH YFYT+V++Q+ M
Sbjct: 288 ENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARM 334
>sp|P19139|CSK21_RAT Casein kinase II, alpha chain (CK II)
Length = 391
Score = 73.9 bits (180), Expect = 3e-13
Identities = 32/47 (68%), Positives = 42/47 (89%)
Frame = +3
Query: 12 DNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQEQSAM 152
+NQ L+S EALDFLDKLLRYDHQ R+T++EA+EH YFYT+V++Q+ M
Sbjct: 288 ENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARM 334
>sp|P68400|CSK21_HUMAN Casein kinase II, alpha chain (CK II)
sp|P68399|CSK21_BOVIN Casein kinase II, alpha chain (CK II)
Length = 391
Score = 73.9 bits (180), Expect = 3e-13
Identities = 32/47 (68%), Positives = 42/47 (89%)
Frame = +3
Query: 12 DNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQEQSAM 152
+NQ L+S EALDFLDKLLRYDHQ R+T++EA+EH YFYT+V++Q+ M
Sbjct: 288 ENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARM 334
>sp|P21868|CSK21_CHICK Casein kinase II, alpha chain (CK II)
Length = 391
Score = 72.0 bits (175), Expect = 1e-12
Identities = 32/47 (68%), Positives = 41/47 (87%)
Frame = +3
Query: 12 DNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQEQSAM 152
+NQ L+S EALDFLDKLLRYDHQ R+T++EA+EH YFY IV++Q+ M
Sbjct: 288 ENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYPIVKDQARM 334
>sp|P28020|CSK22_XENLA Casein kinase II, alpha' chain (CK II)
Length = 392
Score = 71.6 bits (174), Expect = 1e-12
Identities = 32/47 (68%), Positives = 41/47 (87%)
Frame = +3
Query: 12 DNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQEQSAM 152
+NQ L+S EALDFLDKLLRYDHQ R+T++EA++H YFY IV++QS M
Sbjct: 288 ENQHLVSPEALDFLDKLLRYDHQTRLTAREAMDHPYFYPIVKDQSRM 334
>sp|O54833|CSK22_MOUSE Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 70.5 bits (171), Expect = 3e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Frame = +3
Query: 12 DNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQEQS 146
+N+ L+S EALD LDKLLRYDHQ+R+T+KEA+EH YFY +V+EQS
Sbjct: 289 ENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKEQS 333
>sp|P19784|CSK22_HUMAN Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 70.5 bits (171), Expect = 3e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Frame = +3
Query: 12 DNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQEQS 146
+N+ L+S EALD LDKLLRYDHQ+R+T+KEA+EH YFY +V+EQS
Sbjct: 289 ENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKEQS 333
>sp|P20427|CSK22_BOVIN Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 70.5 bits (171), Expect = 3e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Frame = +3
Query: 12 DNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQEQS 146
+N+ L+S EALD LDKLLRYDHQ+R+T+KEA+EH YFY +V+EQS
Sbjct: 289 ENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKEQS 333
>sp|Q60737|CSK21_MOUSE Casein kinase II, alpha chain (CK II)
Length = 391
Score = 70.5 bits (171), Expect = 3e-12
Identities = 31/47 (65%), Positives = 40/47 (85%)
Frame = +3
Query: 12 DNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQEQSAM 152
+NQ L+S EALDFLDKLLRYDHQ R+T +EA+EH +FYT+V+ Q+ M
Sbjct: 288 ENQHLVSPEALDFLDKLLRYDHQSRLTVREAMEHPFFYTVVKNQARM 334
>sp|P21869|CSK22_CHICK Casein kinase II, alpha' chain (CK II)
Length = 350
Score = 68.9 bits (167), Expect = 9e-12
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +3
Query: 12 DNQLLISNEALDFLDKLLRYDHQERITSKEALEHNYFYTIVQEQS 146
+N+ L+S E LD LDKLLRYDHQ+R+T+KEA+EH YFY +V+EQS
Sbjct: 289 ENRHLVSPEVLDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKEQS 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,664,857
Number of Sequences: 369166
Number of extensions: 843276
Number of successful extensions: 2988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2987
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)