Planaria EST Database

DrC_00210

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00210
         (863 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JHT5|AMER1_MOUSE  AMME syndrome candidate gene 1 protei...   228   2e-59
sp|Q9Y4X0|AMER1_HUMAN  AMME syndrome candidate gene 1 protein     228   2e-59
sp|Q9VCF0|Y5902_DROME  Protein CG5902                             197   2e-50
sp|Q22004|AMER1_CAEEL  Hypothetical protein R166.3 in chromo...   174   3e-43
sp|Q9ZVJ2|AMR1_ARATH  Protein At2g38710                           172   8e-43
sp|Q9P6M2|YKQ3_SCHPO  Hypothetical protein C688.03c in chrmo...   123   8e-28
sp|Q9URS8|Y464_KLULA  Hypothetical protein KLLA0D02464g           120   4e-27
sp|Q12012|Y08L_YEAST  Hypothetical protein YOR289W                120   5e-27
sp|O67431|YE44_AQUAE  Hypothetical protein AQ_1444                 58   3e-08
sp|Q58220|Y810_METJA  Hypothetical protein MJ0810                  57   9e-08

>sp|Q9JHT5|AMER1_MOUSE AMME syndrome candidate gene 1 protein homolog
          Length = 344

 Score =  228 bits (580), Expect = 2e-59
 Identities = 103/166 (62%), Positives = 132/166 (79%)
 Frame = +2

Query: 2   TPTFTNKSFPLFVTWSTGKEKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQE 181
           TP FTN+ +PLFVTW  G++K+LRGCIGTF+   LH GL+EY L+SALKDSRF P+++ E
Sbjct: 161 TPRFTNEPYPLFVTWKIGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDE 220

Query: 182 INRLNCAVSLLTNFESNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHVE 361
           + RL C+VSLLTNFE    Y DW VG HGIRIEF++EKGS R++TYLPEVA +QGW H++
Sbjct: 221 LPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFINEKGSKRTATYLPEVAKEQGWDHIQ 280

Query: 362 AVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGHRRN 499
            +DSL+RK GYK  I+ E R +IKLTRY+SEK  +SY EY+ HR++
Sbjct: 281 TIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAHRQH 326

>sp|Q9Y4X0|AMER1_HUMAN AMME syndrome candidate gene 1 protein
          Length = 333

 Score =  228 bits (580), Expect = 2e-59
 Identities = 103/166 (62%), Positives = 132/166 (79%)
 Frame = +2

Query: 2   TPTFTNKSFPLFVTWSTGKEKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQE 181
           TP FTN+ +PLFVTW  G++K+LRGCIGTF+   LH GL+EY L+SALKDSRF P+++ E
Sbjct: 150 TPRFTNEPYPLFVTWKIGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDE 209

Query: 182 INRLNCAVSLLTNFESNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHVE 361
           + RL C+VSLLTNFE    Y DW VG HGIRIEF++EKGS R++TYLPEVA +QGW H++
Sbjct: 210 LPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFINEKGSKRTATYLPEVAKEQGWDHIQ 269

Query: 362 AVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGHRRN 499
            +DSL+RK GYK  I+ E R +IKLTRY+SEK  +SY EY+ HR++
Sbjct: 270 TIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAHRQH 315

>sp|Q9VCF0|Y5902_DROME Protein CG5902
          Length = 243

 Score =  197 bits (502), Expect = 2e-50
 Identities = 89/159 (55%), Positives = 122/159 (76%)
 Frame = +2

Query: 5   PTFTNKSFPLFVTWSTGKEKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQEI 184
           P F+N ++PLFVTW  G++K+LRGCIGTF+   LH GL+EYAL+SA KDSRF PIS+ E+
Sbjct: 70  PVFSNDAYPLFVTWKIGRDKRLRGCIGTFSAMELHHGLREYALTSAFKDSRFAPISRDEL 129

Query: 185 NRLNCAVSLLTNFESNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHVEA 364
            RL  +VS+L NFE    + DW +G HGIRIEF+ E+G  R++TYLP+VA++QGW  ++ 
Sbjct: 130 PRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFLTERGCKRTATYLPQVATEQGWDQLQT 189

Query: 365 VDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEY 481
           +DSL+RK GY+  I+ E R SIKLTRY+S++  + Y+EY
Sbjct: 190 IDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQMHYKEY 228

>sp|Q22004|AMER1_CAEEL Hypothetical protein R166.3 in chromosome II
          Length = 200

 Score =  174 bits (441), Expect = 3e-43
 Identities = 79/161 (49%), Positives = 113/161 (70%)
 Frame = +2

Query: 17  NKSFPLFVTWSTGKEKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQEINRLN 196
           N   PLFVTW  G +  LRGCIGTF++  L  GL EYA +SA  DSRF PIS++E+  L 
Sbjct: 34  NVKLPLFVTWKKGHQHDLRGCIGTFSDLRLGEGLNEYAKTSAFHDSRFKPISREEVPSLQ 93

Query: 197 CAVSLLTNFESNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHVEAVDSL 376
           C VSLL NFE    + DWT+G HG+R+ F D+    RS+ +LPEVA +QGW HVE +D L
Sbjct: 94  CGVSLLINFEPIHNFRDWTIGRHGVRMNF-DDGHRNRSAVFLPEVAQEQGWNHVETIDHL 152

Query: 377 VRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGHRRN 499
           +RK+GY G I++ LR+++++ R+QS K  + Y++Y+ ++++
Sbjct: 153 IRKSGYGGHINDALRSALRIVRFQSSKLVLDYKDYVNYKQS 193

>sp|Q9ZVJ2|AMR1_ARATH Protein At2g38710
          Length = 214

 Score =  172 bits (437), Expect = 8e-43
 Identities = 88/166 (53%), Positives = 111/166 (66%), Gaps = 4/166 (2%)
 Frame = +2

Query: 5   PTFTNKSFPLFVTWS---TGKEKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISK 175
           P F   + PLFVTW     G E +LRGCIGT   + L  G K+YAL+SAL+D RF PI  
Sbjct: 28  PAFEEANHPLFVTWKKIVNGGEPRLRGCIGTLEARRLISGFKDYALTSALRDRRFPPIQA 87

Query: 176 QEINRLNCAVSLLTNFESNLRYSDWTVGTHGIRIEFVD-EKGSTRSSTYLPEVASDQGWT 352
           +E+  L C VS+LT++E    Y DW VG HGI IEF + E  + RS+TYLPEV + +GWT
Sbjct: 88  KELPSLQCTVSVLTDYEDAEDYLDWEVGKHGIIIEFTEPETNTKRSATYLPEVPAHEGWT 147

Query: 353 HVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGH 490
            +EA+DSLVRKAGY GVI+E +R  I LTRYQS    + Y EY+ +
Sbjct: 148 KIEAIDSLVRKAGYNGVITEAVRRRINLTRYQSTLFSMHYSEYLSY 193

>sp|Q9P6M2|YKQ3_SCHPO Hypothetical protein C688.03c in chrmosome I
          Length = 204

 Score =  123 bits (308), Expect = 8e-28
 Identities = 70/157 (44%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
 Frame = +2

Query: 20  KSFPLFVTWSTGK--EKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQEINRL 193
           +S PLFV +++GK  +K+LRGCIGTF  +PL   L  ++  +A  D RF PIS  E+  L
Sbjct: 45  RSIPLFVKFASGKGHDKQLRGCIGTFRARPLVTNLTYFSKQAAFCDERFRPISLGELALL 104

Query: 194 NCAVSLLTNFESNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHVEAVDS 373
            C + LL +FE      DW VG HG+ I+F    G   SSTYLP VA++Q W   E ++S
Sbjct: 105 ECQIDLLVDFEPIDDPLDWEVGIHGVSIKFT-ANGIRYSSTYLPSVAAEQRWDQEETLES 163

Query: 374 LVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYM 484
           L+ KAGY G I       I  TRY+S +   +YEEY+
Sbjct: 164 LIHKAGYYGSIRS---LQITATRYKSLEIGCTYEEYL 197

>sp|Q9URS8|Y464_KLULA Hypothetical protein KLLA0D02464g
          Length = 227

 Score =  120 bits (302), Expect = 4e-27
 Identities = 69/169 (40%), Positives = 104/169 (61%), Gaps = 18/169 (10%)
 Frame = +2

Query: 29  PLFVTWSTGK--EKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQEINRLNCA 202
           PLFVTW   K  E +LRGCIGTF+E  +  GLK YAL SAL+DSRF PI ++E+++L C 
Sbjct: 50  PLFVTWKKLKKGEYQLRGCIGTFSEGKIEEGLKRYALISALQDSRFTPIEREELSQLRCG 109

Query: 203 VSLLTNFESNLRYS-----------DWTVGTHGIRIEFVDEKGSTR-SSTYLPEVASDQG 346
            +LL+ F++   YS           +W +G HGI I+F   K ++R S+T+LPEV  +QG
Sbjct: 110 CNLLSQFKT--IYSSEGTGNSGDIWNWEIGKHGIEIKFRHPKTNSRMSATFLPEVIPEQG 167

Query: 347 WTHVEAVDSLVRKAGYKGVISEELRNSIK----LTRYQSEKCCVSYEEY 481
           W   E  ++L+ KAG    + E +++  K    + RY+  K  ++++E+
Sbjct: 168 WDQRETFENLIEKAGCWNYLEEVMKHWEKYFDEVIRYEGTKSEIAWDEF 216

>sp|Q12012|Y08L_YEAST Hypothetical protein YOR289W
          Length = 251

 Score =  120 bits (301), Expect = 5e-27
 Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 24/179 (13%)
 Frame = +2

Query: 17  NKSFPLFVTWSTGKEKK-----------LRGCIGTFTEQPLHIGLKEYALSSALKDSRFN 163
           N+   LF+TW     K            LRGCIGTF + P+  G+++Y+L +AL+D RF+
Sbjct: 64  NEKTSLFITWKKKSNKHHTIDTNEENYILRGCIGTFAKMPIAHGIEKYSLIAALEDRRFS 123

Query: 164 PISKQEINRLNCAVSLLTNFESNLR--------YSDWTVGTHGIRIEFVDEK-GSTRSST 316
           PI K+E+  L C+ ++L NF++  R          DW +G HGI + F   K G+T S+T
Sbjct: 124 PIQKRELVDLKCSCNILGNFKTIFRGGGNPNGDIFDWELGKHGIELYFKHPKTGTTCSAT 183

Query: 317 YLPEVASDQGWTHVEAVDSLVRKAGYKGVISEELRN----SIKLTRYQSEKCCVSYEEY 481
           +LP+V  +Q W   +   +L+ KAGY G ISE + N     I++ RY+ +K  ++YEE+
Sbjct: 184 FLPDVMPEQHWNKEDTFANLIEKAGYWGNISEVMDNFETYFIEVIRYEGKKSSITYEEF 242

>sp|O67431|YE44_AQUAE Hypothetical protein AQ_1444
          Length = 195

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
 Frame = +2

Query: 17  NKSFPLFVTWSTGKEKKLRGCIGT-FTEQPLHIGLKEYALSSALKDSRFNPISKQEINRL 193
           +++  +F T  T  E  LRGCIG      PL       +L +A +D RF P+ K+E +++
Sbjct: 34  SRNMGVFTTLKTYPEHNLRGCIGVPLPVYPLWYATVYSSLQAAFQDPRFYPLKKEEFDKV 93

Query: 194 NCAVSLLTNFE-----SNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHV 358
              ++LLT  E              +G HG+ IE  ++KG       LP+V  + GW+ V
Sbjct: 94  LWEITLLTPPEELKVPKEELPEQIEIGKHGLIIEKGEQKG-----LLLPQVPVEYGWSPV 148

Query: 359 EAVDSLVRKAG 391
           E ++    KAG
Sbjct: 149 EFLEYTCLKAG 159

>sp|Q58220|Y810_METJA Hypothetical protein MJ0810
          Length = 201

 Score = 56.6 bits (135), Expect = 9e-08
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 7/157 (4%)
 Frame = +2

Query: 5   PTFTNKSFPLFVTWSTGKEKKLRGCIGTFTE-QPLHIGLKEYALSSALKDSRFNPISKQE 181
           P   N+    F T  T  +K+LRGCIG      PL   L+E A+S+A KD RF P++ +E
Sbjct: 35  PEVFNEKRGCFCTLHTYPDKELRGCIGIPEPIMPLIEALEEAAISAATKDPRFPPVTLEE 94

Query: 182 INRLNCAVSLLTNFE------SNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQ 343
           ++ +   VS+LT  E               +G  G+ IE+   +G       LP+V  + 
Sbjct: 95  MDSIVVEVSILTPPELIKVNHPKEYLEKIKIGRDGLIIEYGFYRG-----LLLPQVPVEY 149

Query: 344 GWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSE 454
           GW   E +  L  KAG        L   +K+ R++++
Sbjct: 150 GWDVEEYLAHLCLKAGLPP--DMWLAEGVKIYRFEAQ 184

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,465,920
Number of Sequences: 369166
Number of extensions: 1827336
Number of successful extensions: 6259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6235
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00210

  1. Dr_sW_006_D06
  2. Dr_sW_028_E09
  3. Dr_sW_016_D08
  4. Dr_sW_004_N02