Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_E09
(265 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JHT5|AMER1_MOUSE AMME syndrome candidate gene 1 protei... 71 9e-13
sp|Q9Y4X0|AMER1_HUMAN AMME syndrome candidate gene 1 protein 71 9e-13
sp|Q9ZVJ2|AMR1_ARATH Protein At2g38710 65 6e-11
sp|Q22004|AMER1_CAEEL Hypothetical protein R166.3 in chromo... 59 3e-09
sp|Q9VCF0|Y5902_DROME Protein CG5902 56 3e-08
sp|Q12012|Y08L_YEAST Hypothetical protein YOR289W 37 0.014
sp|Q9P6M2|YKQ3_SCHPO Hypothetical protein C688.03c in chrmo... 36 0.031
sp|Q8CGI1|CD008_MOUSE Protein C4orf008 homolog 28 8.4
>sp|Q9JHT5|AMER1_MOUSE AMME syndrome candidate gene 1 protein homolog
Length = 344
Score = 70.9 bits (172), Expect = 9e-13
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = +1
Query: 1 GWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGHRRN 156
GW H++ +DSL+RK GYK I+ E R +IKLTRY+SEK +SY EY+ HR++
Sbjct: 275 GWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAHRQH 326
>sp|Q9Y4X0|AMER1_HUMAN AMME syndrome candidate gene 1 protein
Length = 333
Score = 70.9 bits (172), Expect = 9e-13
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = +1
Query: 1 GWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGHRRN 156
GW H++ +DSL+RK GYK I+ E R +IKLTRY+SEK +SY EY+ HR++
Sbjct: 264 GWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAHRQH 315
>sp|Q9ZVJ2|AMR1_ARATH Protein At2g38710
Length = 214
Score = 64.7 bits (156), Expect = 6e-11
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = +1
Query: 1 GWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGH 147
GWT +EA+DSLVRKAGY GVI+E +R I LTRYQS + Y EY+ +
Sbjct: 145 GWTKIEAIDSLVRKAGYNGVITEAVRRRINLTRYQSTLFSMHYSEYLSY 193
>sp|Q22004|AMER1_CAEEL Hypothetical protein R166.3 in chromosome II
Length = 200
Score = 59.3 bits (142), Expect = 3e-09
Identities = 21/52 (40%), Positives = 40/52 (76%)
Frame = +1
Query: 1 GWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGHRRN 156
GW HVE +D L+RK+GY G I++ LR+++++ R+QS K + Y++Y+ ++++
Sbjct: 142 GWNHVETIDHLIRKSGYGGHINDALRSALRIVRFQSSKLVLDYKDYVNYKQS 193
>sp|Q9VCF0|Y5902_DROME Protein CG5902
Length = 243
Score = 55.8 bits (133), Expect = 3e-08
Identities = 23/46 (50%), Positives = 34/46 (73%)
Frame = +1
Query: 1 GWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEY 138
GW ++ +DSL+RK GY+ I+ E R SIKLTRY+S++ + Y+EY
Sbjct: 183 GWDQLQTIDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQMHYKEY 228
>sp|Q12012|Y08L_YEAST Hypothetical protein YOR289W
Length = 251
Score = 37.0 bits (84), Expect = 0.014
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +1
Query: 4 WTHVEAVDSLVRKAGYKGVISEELRN----SIKLTRYQSEKCCVSYEEY 138
W + +L+ KAGY G ISE + N I++ RY+ +K ++YEE+
Sbjct: 194 WNKEDTFANLIEKAGYWGNISEVMDNFETYFIEVIRYEGKKSSITYEEF 242
>sp|Q9P6M2|YKQ3_SCHPO Hypothetical protein C688.03c in chrmosome I
Length = 204
Score = 35.8 bits (81), Expect = 0.031
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 4 WTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYM 141
W E ++SL+ KAGY G I I TRY+S + +YEEY+
Sbjct: 155 WDQEETLESLIHKAGYYGSIRSL---QITATRYKSLEIGCTYEEYL 197
>sp|Q8CGI1|CD008_MOUSE Protein C4orf008 homolog
Length = 944
Score = 27.7 bits (60), Expect = 8.4
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 253 KAICSTNQSTLTRQHPPTSRLS-PSLPFCPPSNRFAC 146
K + N T TR+H +SRLS P P C R AC
Sbjct: 177 KVVTGENNFTDTRRHMLSSRLSMPDCPNCNYRRRCAC 213
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,011,866
Number of Sequences: 369166
Number of extensions: 409246
Number of successful extensions: 1629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)