Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_N02
(335 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9N4V0|FLP18_CAEEL FMRFamide-like neuropeptide 18 precur... 30 1.3
sp|P33455|VGLM_SEOU8 M polyprotein precursor [Contains: Gly... 30 1.7
sp|P28728|VGLM_HANTB M polyprotein precursor [Contains: Gly... 30 1.7
sp|Q93QY7|MPRF_STAXY Probable lysylphosphatidylglycerol syn... 30 1.7
sp|P17880|VGLM_SEOUS M polyprotein precursor [Contains: Gly... 30 1.7
sp|Q4L667|MPRF_STAHJ Probable lysylphosphatidylglycerol syn... 30 2.3
sp|P16493|VGLM_HANTH M polyprotein precursor [Contains: Gly... 29 3.9
sp|P08668|VGLM_HANTV M polyprotein precursor [Contains: Gly... 28 5.1
sp|Q8NWU7|MPRF_STAAW Probable lysylphosphatidylglycerol syn... 28 5.1
sp|Q7A5R9|MPRF_STAAN Probable lysylphosphatidylglycerol syn... 28 5.1
>sp|Q9N4V0|FLP18_CAEEL FMRFamide-like neuropeptide 18 precursor [Contains: SVPGVLRF-amide
1; SVPGVLRF-amide 2; SVPGVLRF-amide 3]
Length = 309
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +1
Query: 91 DAFCYYYNNKLGSIFLLFSNNIDQYYYC------YSGMFLLSLVE*MCVRMRACLLLSPA 252
D C++ N K S L F I+ Y Y +SG+ L+SL C +R L +
Sbjct: 71 DQLCFFLNEKSSSQALKFLPKIESYVYSRLDMQRWSGVLLISL----CCLLRGALAYTEP 126
Query: 253 IARMVQ 270
I +V+
Sbjct: 127 IYEIVE 132
>sp|P33455|VGLM_SEOU8 M polyprotein precursor [Contains: Glycoprotein G1; Glycoprotein
G2]
Length = 1133
Score = 30.0 bits (66), Expect = 1.7
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = -2
Query: 247 GTGASTHAYEH----TFTQPMRVETSLNNNNNIDQY----C*RREERCCLIYYCNSSKKR 92
G GAS A+ T PM + + N +Q C R + +I YCN KK
Sbjct: 382 GPGASCEAFSEGGIFNITSPMCLVSKQNRFRAAEQQISFVCQRVDMD--IIVYCNGQKKT 439
Query: 91 PITKTIDIRRFVQPINQLSLVSTLQQVA 8
+TKT+ I + + I SL S L VA
Sbjct: 440 ILTKTLVIGQCIYTIT--SLFSLLPGVA 465
>sp|P28728|VGLM_HANTB M polyprotein precursor [Contains: Glycoprotein G1; Glycoprotein
G2]
Length = 1133
Score = 30.0 bits (66), Expect = 1.7
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = -2
Query: 247 GTGASTHAYEH----TFTQPMRVETSLNNNNNIDQY----C*RREERCCLIYYCNSSKKR 92
G GAS A+ T PM + + N +Q C R + +I YCN KK
Sbjct: 382 GPGASCEAFSEGGIFNITSPMCLVSKQNRFRAAEQQISFVCQRVDMD--IIVYCNGQKKT 439
Query: 91 PITKTIDIRRFVQPINQLSLVSTLQQVA 8
+TKT+ I + + I SL S L VA
Sbjct: 440 ILTKTLVIGQCIYTIT--SLFSLLPGVA 465
>sp|Q93QY7|MPRF_STAXY Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
Length = 841
Score = 30.0 bits (66), Expect = 1.7
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +1
Query: 76 LSLLLDAFCYYYNNKLGSIFLLFSNNIDQYYYCYSGMFLLSLVE*MCVRMRACLLLSPAI 255
L LL + ++ NN + +++ D +Y Y +++ + + ACLLL +
Sbjct: 340 LLLLFTSLVFFLNN----LTIIYDGLYDPNHYIY---YII-----VSIHTCACLLLLLNV 387
Query: 256 ARMVQLSVLCILFSMILILIINIQRA 333
+ +LS ILFS+I +L I I A
Sbjct: 388 IGVYKLSKRAILFSIISVLFIFIATA 413
>sp|P17880|VGLM_SEOUS M polyprotein precursor [Contains: Glycoprotein G1; Glycoprotein
G2]
Length = 1133
Score = 30.0 bits (66), Expect = 1.7
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = -2
Query: 247 GTGASTHAYEH----TFTQPMRVETSLNNNNNIDQY----C*RREERCCLIYYCNSSKKR 92
G GAS A+ T PM + + N +Q C R + +I YCN KK
Sbjct: 382 GPGASCEAFSEGGIFNITSPMCLVSKQNRFRAAEQQISFVCQRVDMD--IIVYCNGQKKT 439
Query: 91 PITKTIDIRRFVQPINQLSLVSTLQQVA 8
+TKT+ I + + I SL S L VA
Sbjct: 440 ILTKTLVIGQCIYTIT--SLFSLLPGVA 465
>sp|Q4L667|MPRF_STAHJ Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
Length = 840
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +1
Query: 82 LLLDAFCYYYNNKLGSIFLLFSNNIDQYYYCYSGMFLLSLVE*MCVRMRACLLLSPAIAR 261
+L+ +F ++ NN I +++ D +++ Y M + V ACLLL +
Sbjct: 342 VLITSFVFFINN----ITIVYDGLYDDHHFAYYIM--------LSVHTSACLLLLINVRG 389
Query: 262 MVQLSVLCILFSMILILII 318
+ + S ILF MI +++I
Sbjct: 390 VFKQSRRAILFVMISLVLI 408
>sp|P16493|VGLM_HANTH M polyprotein precursor [Contains: Glycoprotein G1; Glycoprotein
G2]
Length = 1134
Score = 28.9 bits (63), Expect = 3.9
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Frame = -2
Query: 277 HSIAPYARSQGTGASTHAYEH----TFTQPMRVETSLNN----NNNIDQYC*RREERCCL 122
H + G GAS A+ T PM + + N ++ C R + +
Sbjct: 374 HPFTVFCVLSGPGASCEAFSEGGIFNITSPMCLVSKQNRFRLTEQQVNFVCQRVDVD--I 431
Query: 121 IYYCNSSKKRPITKTIDIRRFVQPINQLSLVSTLQQVA 8
+ YCN +K +TKT+ I + + I SL S L VA
Sbjct: 432 VVYCNGQRKVILTKTLVIGQCIYTIT--SLFSLLPGVA 467
>sp|P08668|VGLM_HANTV M polyprotein precursor [Contains: Glycoprotein G1; Glycoprotein
G2]
Length = 1135
Score = 28.5 bits (62), Expect = 5.1
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Frame = -2
Query: 277 HSIAPYARSQGTGASTHAYEH----TFTQPMRVETSLNN----NNNIDQYC*RREERCCL 122
H + G GAS A+ T PM + + N ++ C R + +
Sbjct: 374 HPCTVFCVLSGPGASCEAFSEGGIFNITSPMCLVSKQNRFRLTEQQVNFVCQRVDMD--I 431
Query: 121 IYYCNSSKKRPITKTIDIRRFVQPINQLSLVSTLQQVA 8
+ YCN +K +TKT+ I + + I SL S L VA
Sbjct: 432 VVYCNGQRKVILTKTLVIGQCIYTIT--SLFSLLPGVA 467
>sp|Q8NWU7|MPRF_STAAW Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
sp|Q6G9J9|MPRF_STAAS Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
Length = 840
Score = 28.5 bits (62), Expect = 5.1
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 136 LLFSNNIDQYYYC-YSGMFLLSLVE*MCVRMRACLLLSPAIARMVQLSVLCILFSMILIL 312
+ F NN+ Y Y G L + + + ACLLL + + + S I+F+MI IL
Sbjct: 348 IFFVNNLTIVYDALYDGNHLTYYIL-LAIHTSACLLLLLNVVGIYKQSRRAIIFAMISIL 406
Query: 313 IINI 324
+I +
Sbjct: 407 LITV 410
>sp|Q7A5R9|MPRF_STAAN Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
sp|Q99UB9|MPRF_STAAM Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
Length = 840
Score = 28.5 bits (62), Expect = 5.1
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 136 LLFSNNIDQYYYC-YSGMFLLSLVE*MCVRMRACLLLSPAIARMVQLSVLCILFSMILIL 312
+ F NN+ Y Y G L + + + ACLLL + + + S I+F+MI IL
Sbjct: 348 IFFVNNLTIVYDALYDGNHLTYYIL-LAIHTSACLLLLLNVVGIYKQSRRAIIFAMISIL 406
Query: 313 IINI 324
+I +
Sbjct: 407 LITV 410
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,405,840
Number of Sequences: 369166
Number of extensions: 559079
Number of successful extensions: 1614
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)