Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_D06
(659 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JHT5|AMER1_MOUSE AMME syndrome candidate gene 1 protei... 228 1e-59
sp|Q9Y4X0|AMER1_HUMAN AMME syndrome candidate gene 1 protein 228 1e-59
sp|Q9VCF0|Y5902_DROME Protein CG5902 197 2e-50
sp|Q22004|AMER1_CAEEL Hypothetical protein R166.3 in chromo... 174 2e-43
sp|Q9ZVJ2|AMR1_ARATH Protein At2g38710 172 5e-43
sp|Q9P6M2|YKQ3_SCHPO Hypothetical protein C688.03c in chrmo... 123 5e-28
sp|Q9URS8|Y464_KLULA Hypothetical protein KLLA0D02464g 120 2e-27
sp|Q12012|Y08L_YEAST Hypothetical protein YOR289W 120 3e-27
sp|O67431|YE44_AQUAE Hypothetical protein AQ_1444 58 2e-08
sp|Q58220|Y810_METJA Hypothetical protein MJ0810 57 6e-08
>sp|Q9JHT5|AMER1_MOUSE AMME syndrome candidate gene 1 protein homolog
Length = 344
Score = 228 bits (580), Expect = 1e-59
Identities = 103/166 (62%), Positives = 132/166 (79%)
Frame = +2
Query: 2 TPTFTNKSFPLFVTWSTGKEKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQE 181
TP FTN+ +PLFVTW G++K+LRGCIGTF+ LH GL+EY L+SALKDSRF P+++ E
Sbjct: 161 TPRFTNEPYPLFVTWKIGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDE 220
Query: 182 INRLNCAVSLLTNFESNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHVE 361
+ RL C+VSLLTNFE Y DW VG HGIRIEF++EKGS R++TYLPEVA +QGW H++
Sbjct: 221 LPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFINEKGSKRTATYLPEVAKEQGWDHIQ 280
Query: 362 AVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGHRRN 499
+DSL+RK GYK I+ E R +IKLTRY+SEK +SY EY+ HR++
Sbjct: 281 TIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAHRQH 326
>sp|Q9Y4X0|AMER1_HUMAN AMME syndrome candidate gene 1 protein
Length = 333
Score = 228 bits (580), Expect = 1e-59
Identities = 103/166 (62%), Positives = 132/166 (79%)
Frame = +2
Query: 2 TPTFTNKSFPLFVTWSTGKEKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQE 181
TP FTN+ +PLFVTW G++K+LRGCIGTF+ LH GL+EY L+SALKDSRF P+++ E
Sbjct: 150 TPRFTNEPYPLFVTWKIGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDE 209
Query: 182 INRLNCAVSLLTNFESNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHVE 361
+ RL C+VSLLTNFE Y DW VG HGIRIEF++EKGS R++TYLPEVA +QGW H++
Sbjct: 210 LPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFINEKGSKRTATYLPEVAKEQGWDHIQ 269
Query: 362 AVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGHRRN 499
+DSL+RK GYK I+ E R +IKLTRY+SEK +SY EY+ HR++
Sbjct: 270 TIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAHRQH 315
>sp|Q9VCF0|Y5902_DROME Protein CG5902
Length = 243
Score = 197 bits (502), Expect = 2e-50
Identities = 89/159 (55%), Positives = 122/159 (76%)
Frame = +2
Query: 5 PTFTNKSFPLFVTWSTGKEKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQEI 184
P F+N ++PLFVTW G++K+LRGCIGTF+ LH GL+EYAL+SA KDSRF PIS+ E+
Sbjct: 70 PVFSNDAYPLFVTWKIGRDKRLRGCIGTFSAMELHHGLREYALTSAFKDSRFAPISRDEL 129
Query: 185 NRLNCAVSLLTNFESNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHVEA 364
RL +VS+L NFE + DW +G HGIRIEF+ E+G R++TYLP+VA++QGW ++
Sbjct: 130 PRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFLTERGCKRTATYLPQVATEQGWDQLQT 189
Query: 365 VDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEY 481
+DSL+RK GY+ I+ E R SIKLTRY+S++ + Y+EY
Sbjct: 190 IDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQMHYKEY 228
>sp|Q22004|AMER1_CAEEL Hypothetical protein R166.3 in chromosome II
Length = 200
Score = 174 bits (441), Expect = 2e-43
Identities = 79/161 (49%), Positives = 113/161 (70%)
Frame = +2
Query: 17 NKSFPLFVTWSTGKEKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQEINRLN 196
N PLFVTW G + LRGCIGTF++ L GL EYA +SA DSRF PIS++E+ L
Sbjct: 34 NVKLPLFVTWKKGHQHDLRGCIGTFSDLRLGEGLNEYAKTSAFHDSRFKPISREEVPSLQ 93
Query: 197 CAVSLLTNFESNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHVEAVDSL 376
C VSLL NFE + DWT+G HG+R+ F D+ RS+ +LPEVA +QGW HVE +D L
Sbjct: 94 CGVSLLINFEPIHNFRDWTIGRHGVRMNF-DDGHRNRSAVFLPEVAQEQGWNHVETIDHL 152
Query: 377 VRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGHRRN 499
+RK+GY G I++ LR+++++ R+QS K + Y++Y+ ++++
Sbjct: 153 IRKSGYGGHINDALRSALRIVRFQSSKLVLDYKDYVNYKQS 193
>sp|Q9ZVJ2|AMR1_ARATH Protein At2g38710
Length = 214
Score = 172 bits (437), Expect = 5e-43
Identities = 88/166 (53%), Positives = 111/166 (66%), Gaps = 4/166 (2%)
Frame = +2
Query: 5 PTFTNKSFPLFVTWS---TGKEKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISK 175
P F + PLFVTW G E +LRGCIGT + L G K+YAL+SAL+D RF PI
Sbjct: 28 PAFEEANHPLFVTWKKIVNGGEPRLRGCIGTLEARRLISGFKDYALTSALRDRRFPPIQA 87
Query: 176 QEINRLNCAVSLLTNFESNLRYSDWTVGTHGIRIEFVD-EKGSTRSSTYLPEVASDQGWT 352
+E+ L C VS+LT++E Y DW VG HGI IEF + E + RS+TYLPEV + +GWT
Sbjct: 88 KELPSLQCTVSVLTDYEDAEDYLDWEVGKHGIIIEFTEPETNTKRSATYLPEVPAHEGWT 147
Query: 353 HVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYMGH 490
+EA+DSLVRKAGY GVI+E +R I LTRYQS + Y EY+ +
Sbjct: 148 KIEAIDSLVRKAGYNGVITEAVRRRINLTRYQSTLFSMHYSEYLSY 193
>sp|Q9P6M2|YKQ3_SCHPO Hypothetical protein C688.03c in chrmosome I
Length = 204
Score = 123 bits (308), Expect = 5e-28
Identities = 70/157 (44%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
Frame = +2
Query: 20 KSFPLFVTWSTGK--EKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQEINRL 193
+S PLFV +++GK +K+LRGCIGTF +PL L ++ +A D RF PIS E+ L
Sbjct: 45 RSIPLFVKFASGKGHDKQLRGCIGTFRARPLVTNLTYFSKQAAFCDERFRPISLGELALL 104
Query: 194 NCAVSLLTNFESNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHVEAVDS 373
C + LL +FE DW VG HG+ I+F G SSTYLP VA++Q W E ++S
Sbjct: 105 ECQIDLLVDFEPIDDPLDWEVGIHGVSIKFT-ANGIRYSSTYLPSVAAEQRWDQEETLES 163
Query: 374 LVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYM 484
L+ KAGY G I I TRY+S + +YEEY+
Sbjct: 164 LIHKAGYYGSIRS---LQITATRYKSLEIGCTYEEYL 197
>sp|Q9URS8|Y464_KLULA Hypothetical protein KLLA0D02464g
Length = 227
Score = 120 bits (302), Expect = 2e-27
Identities = 69/169 (40%), Positives = 104/169 (61%), Gaps = 18/169 (10%)
Frame = +2
Query: 29 PLFVTWSTGK--EKKLRGCIGTFTEQPLHIGLKEYALSSALKDSRFNPISKQEINRLNCA 202
PLFVTW K E +LRGCIGTF+E + GLK YAL SAL+DSRF PI ++E+++L C
Sbjct: 50 PLFVTWKKLKKGEYQLRGCIGTFSEGKIEEGLKRYALISALQDSRFTPIEREELSQLRCG 109
Query: 203 VSLLTNFESNLRYS-----------DWTVGTHGIRIEFVDEKGSTR-SSTYLPEVASDQG 346
+LL+ F++ YS +W +G HGI I+F K ++R S+T+LPEV +QG
Sbjct: 110 CNLLSQFKT--IYSSEGTGNSGDIWNWEIGKHGIEIKFRHPKTNSRMSATFLPEVIPEQG 167
Query: 347 WTHVEAVDSLVRKAGYKGVISEELRNSIK----LTRYQSEKCCVSYEEY 481
W E ++L+ KAG + E +++ K + RY+ K ++++E+
Sbjct: 168 WDQRETFENLIEKAGCWNYLEEVMKHWEKYFDEVIRYEGTKSEIAWDEF 216
>sp|Q12012|Y08L_YEAST Hypothetical protein YOR289W
Length = 251
Score = 120 bits (301), Expect = 3e-27
Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 24/179 (13%)
Frame = +2
Query: 17 NKSFPLFVTWSTGKEKK-----------LRGCIGTFTEQPLHIGLKEYALSSALKDSRFN 163
N+ LF+TW K LRGCIGTF + P+ G+++Y+L +AL+D RF+
Sbjct: 64 NEKTSLFITWKKKSNKHHTIDTNEENYILRGCIGTFAKMPIAHGIEKYSLIAALEDRRFS 123
Query: 164 PISKQEINRLNCAVSLLTNFESNLR--------YSDWTVGTHGIRIEFVDEK-GSTRSST 316
PI K+E+ L C+ ++L NF++ R DW +G HGI + F K G+T S+T
Sbjct: 124 PIQKRELVDLKCSCNILGNFKTIFRGGGNPNGDIFDWELGKHGIELYFKHPKTGTTCSAT 183
Query: 317 YLPEVASDQGWTHVEAVDSLVRKAGYKGVISEELRN----SIKLTRYQSEKCCVSYEEY 481
+LP+V +Q W + +L+ KAGY G ISE + N I++ RY+ +K ++YEE+
Sbjct: 184 FLPDVMPEQHWNKEDTFANLIEKAGYWGNISEVMDNFETYFIEVIRYEGKKSSITYEEF 242
>sp|O67431|YE44_AQUAE Hypothetical protein AQ_1444
Length = 195
Score = 58.2 bits (139), Expect = 2e-08
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Frame = +2
Query: 17 NKSFPLFVTWSTGKEKKLRGCIGT-FTEQPLHIGLKEYALSSALKDSRFNPISKQEINRL 193
+++ +F T T E LRGCIG PL +L +A +D RF P+ K+E +++
Sbjct: 34 SRNMGVFTTLKTYPEHNLRGCIGVPLPVYPLWYATVYSSLQAAFQDPRFYPLKKEEFDKV 93
Query: 194 NCAVSLLTNFE-----SNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQGWTHV 358
++LLT E +G HG+ IE ++KG LP+V + GW+ V
Sbjct: 94 LWEITLLTPPEELKVPKEELPEQIEIGKHGLIIEKGEQKG-----LLLPQVPVEYGWSPV 148
Query: 359 EAVDSLVRKAG 391
E ++ KAG
Sbjct: 149 EFLEYTCLKAG 159
>sp|Q58220|Y810_METJA Hypothetical protein MJ0810
Length = 201
Score = 56.6 bits (135), Expect = 6e-08
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 7/157 (4%)
Frame = +2
Query: 5 PTFTNKSFPLFVTWSTGKEKKLRGCIGTFTE-QPLHIGLKEYALSSALKDSRFNPISKQE 181
P N+ F T T +K+LRGCIG PL L+E A+S+A KD RF P++ +E
Sbjct: 35 PEVFNEKRGCFCTLHTYPDKELRGCIGIPEPIMPLIEALEEAAISAATKDPRFPPVTLEE 94
Query: 182 INRLNCAVSLLTNFE------SNLRYSDWTVGTHGIRIEFVDEKGSTRSSTYLPEVASDQ 343
++ + VS+LT E +G G+ IE+ +G LP+V +
Sbjct: 95 MDSIVVEVSILTPPELIKVNHPKEYLEKIKIGRDGLIIEYGFYRG-----LLLPQVPVEY 149
Query: 344 GWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSE 454
GW E + L KAG L +K+ R++++
Sbjct: 150 GWDVEEYLAHLCLKAGLPP--DMWLAEGVKIYRFEAQ 184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,790,433
Number of Sequences: 369166
Number of extensions: 1377782
Number of successful extensions: 5081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5061
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5511356910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)