Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_D08
(567 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JHT5|AMER1_MOUSE AMME syndrome candidate gene 1 protei... 91 2e-18
sp|Q9Y4X0|AMER1_HUMAN AMME syndrome candidate gene 1 protein 91 2e-18
sp|Q9ZVJ2|AMR1_ARATH Protein At2g38710 81 2e-15
sp|Q22004|AMER1_CAEEL Hypothetical protein R166.3 in chromo... 76 5e-14
sp|Q9VCF0|Y5902_DROME Protein CG5902 74 2e-13
sp|Q9P6M2|YKQ3_SCHPO Hypothetical protein C688.03c in chrmo... 53 5e-07
sp|Q12012|Y08L_YEAST Hypothetical protein YOR289W 51 2e-06
sp|Q9URS8|Y464_KLULA Hypothetical protein KLLA0D02464g 43 6e-04
sp|Q93QY7|MPRF_STAXY Probable lysylphosphatidylglycerol syn... 30 3.2
sp|Q4L667|MPRF_STAHJ Probable lysylphosphatidylglycerol syn... 30 4.2
>sp|Q9JHT5|AMER1_MOUSE AMME syndrome candidate gene 1 protein homolog
Length = 344
Score = 91.3 bits (225), Expect = 2e-18
Identities = 39/67 (58%), Positives = 53/67 (79%)
Frame = +3
Query: 3 STRSSTYLPEVASDQGWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEE 182
S R++TYLPEVA +QGW H++ +DSL+RK GYK I+ E R +IKLTRY+SEK +SY E
Sbjct: 260 SKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAE 319
Query: 183 YMGHRRN 203
Y+ HR++
Sbjct: 320 YLAHRQH 326
>sp|Q9Y4X0|AMER1_HUMAN AMME syndrome candidate gene 1 protein
Length = 333
Score = 91.3 bits (225), Expect = 2e-18
Identities = 39/67 (58%), Positives = 53/67 (79%)
Frame = +3
Query: 3 STRSSTYLPEVASDQGWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEE 182
S R++TYLPEVA +QGW H++ +DSL+RK GYK I+ E R +IKLTRY+SEK +SY E
Sbjct: 249 SKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAE 308
Query: 183 YMGHRRN 203
Y+ HR++
Sbjct: 309 YLAHRQH 315
>sp|Q9ZVJ2|AMR1_ARATH Protein At2g38710
Length = 214
Score = 81.3 bits (199), Expect = 2e-15
Identities = 37/62 (59%), Positives = 47/62 (75%)
Frame = +3
Query: 9 RSSTYLPEVASDQGWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYM 188
RS+TYLPEV + +GWT +EA+DSLVRKAGY GVI+E +R I LTRYQS + Y EY+
Sbjct: 132 RSATYLPEVPAHEGWTKIEAIDSLVRKAGYNGVITEAVRRRINLTRYQSTLFSMHYSEYL 191
Query: 189 GH 194
+
Sbjct: 192 SY 193
>sp|Q22004|AMER1_CAEEL Hypothetical protein R166.3 in chromosome II
Length = 200
Score = 76.3 bits (186), Expect = 5e-14
Identities = 29/65 (44%), Positives = 51/65 (78%)
Frame = +3
Query: 9 RSSTYLPEVASDQGWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYM 188
RS+ +LPEVA +QGW HVE +D L+RK+GY G I++ LR+++++ R+QS K + Y++Y+
Sbjct: 129 RSAVFLPEVAQEQGWNHVETIDHLIRKSGYGGHINDALRSALRIVRFQSSKLVLDYKDYV 188
Query: 189 GHRRN 203
++++
Sbjct: 189 NYKQS 193
>sp|Q9VCF0|Y5902_DROME Protein CG5902
Length = 243
Score = 74.3 bits (181), Expect = 2e-13
Identities = 31/59 (52%), Positives = 47/59 (79%)
Frame = +3
Query: 9 RSSTYLPEVASDQGWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEY 185
R++TYLP+VA++QGW ++ +DSL+RK GY+ I+ E R SIKLTRY+S++ + Y+EY
Sbjct: 170 RTATYLPQVATEQGWDQLQTIDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQMHYKEY 228
>sp|Q9P6M2|YKQ3_SCHPO Hypothetical protein C688.03c in chrmosome I
Length = 204
Score = 53.1 bits (126), Expect = 5e-07
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +3
Query: 12 SSTYLPEVASDQGWTHVEAVDSLVRKAGYKGVISEELRNSIKLTRYQSEKCCVSYEEYM 188
SSTYLP VA++Q W E ++SL+ KAGY G I I TRY+S + +YEEY+
Sbjct: 142 SSTYLPSVAAEQRWDQEETLESLIHKAGYYGSIRS---LQITATRYKSLEIGCTYEEYL 197
>sp|Q12012|Y08L_YEAST Hypothetical protein YOR289W
Length = 251
Score = 50.8 bits (120), Expect = 2e-06
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Frame = +3
Query: 3 STRSSTYLPEVASDQGWTHVEAVDSLVRKAGYKGVISEELRN----SIKLTRYQSEKCCV 170
+T S+T+LP+V +Q W + +L+ KAGY G ISE + N I++ RY+ +K +
Sbjct: 178 TTCSATFLPDVMPEQHWNKEDTFANLIEKAGYWGNISEVMDNFETYFIEVIRYEGKKSSI 237
Query: 171 SYEEY 185
+YEE+
Sbjct: 238 TYEEF 242
>sp|Q9URS8|Y464_KLULA Hypothetical protein KLLA0D02464g
Length = 227
Score = 42.7 bits (99), Expect = 6e-04
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +3
Query: 3 STRSSTYLPEVASDQGWTHVEAVDSLVRKAGYKGVISEELRNSIK----LTRYQSEKCCV 170
S S+T+LPEV +QGW E ++L+ KAG + E +++ K + RY+ K +
Sbjct: 152 SRMSATFLPEVIPEQGWDQRETFENLIEKAGCWNYLEEVMKHWEKYFDEVIRYEGTKSEI 211
Query: 171 SYEEY 185
+++E+
Sbjct: 212 AWDEF 216
>sp|Q93QY7|MPRF_STAXY Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
Length = 841
Score = 30.4 bits (67), Expect = 3.2
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +2
Query: 308 LSLLLDAFCYYYNNKLGSIFLLFSNNIDQYYYCYSGMFLLSLVE*MCVRVRACLLLSPAI 487
L LL + ++ NN + +++ D +Y Y +++ + + ACLLL +
Sbjct: 340 LLLLFTSLVFFLNN----LTIIYDGLYDPNHYIY---YII-----VSIHTCACLLLLLNV 387
Query: 488 ARMVQLSVLCILFSMILILIINIQRA 565
+ +LS ILFS+I +L I I A
Sbjct: 388 IGVYKLSKRAILFSIISVLFIFIATA 413
>sp|Q4L667|MPRF_STAHJ Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
Length = 840
Score = 30.0 bits (66), Expect = 4.2
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +2
Query: 314 LLLDAFCYYYNNKLGSIFLLFSNNIDQYYYCYSGMFLLSLVE*MCVRVRACLLLSPAIAR 493
+L+ +F ++ NN I +++ D +++ Y M + V ACLLL +
Sbjct: 342 VLITSFVFFINN----ITIVYDGLYDDHHFAYYIM--------LSVHTSACLLLLINVRG 389
Query: 494 MVQLSVLCILFSMILILII 550
+ + S ILF MI +++I
Sbjct: 390 VFKQSRRAILFVMISLVLI 408
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,192,782
Number of Sequences: 369166
Number of extensions: 1089915
Number of successful extensions: 3928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3922
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)