Planarian EST Database

DrC_00130

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00130 TATTGTATTTACAGATGCCCGAAAAAGCTATAAAAGTAGACAAGTGGGATACAAATGCCA CCAAAAATGCTTTGGATGATGGTTTTAAAAAGATATTAAAGGAGCAGTATAAATTTGAAG AAAAGTTTGCATTAATTGATGGAAGATTGCTAATAAGCACCGTTGCAGTGCTTTGCGGAG GTGTTGCAGTATTATATGATTGGTTTTATCCATTTCCTGCATCTAAATTAGTTTTAATTG TTTGCGTTTTATTATATTTTGCACTTACTGGATTATTAACATGCTACATTATGTTTGTAG AAAGAAGTACTTTCTTTTTAGCTCATGAAAATGATACTGCTGGACTAGATAAACCCATCA AATGGAATTTTCAATCTAAAATGAAAAAATACCAAGATAAATATGAACTAACGATTAAAC GAGAAGACTTGAATGCTAAACAATCAAATCTAATGACTGAATCAAAATCAATTGCCGAAT TTTTCGATATAAAAGGGAATTTACGAATGGATATTTTAGAAAAATATGTTACCAACGTAA AGACAAATTTAGAAACCAAAAAAACCAAGTAAAAACCCGCCGTAATATTTGAATATTTAT TCTTTGGTGTGAGTCAGTTTGTGTGCGTGTGTGTGCAAGAGTGAGTTTGTGTGCGAGTCT GTGTGCGTGTTGAATTATTAATGTTTTATTGGGTAATAAATTATGTTAATGTTTTTTTGA TATAAATTTTGTCTTGTCCCAATTAATTTGCAATAAATATTGAGTTGTT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00130
         (769 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5M8Y1|SPCS2_XENTR  Probable signal peptidase complex sub...   157   3e-38
sp|Q28250|SPCS2_CANFA  Signal peptidase complex subunit 2 (M...   155   9e-38
sp|Q15005|SPCS2_HUMAN  Signal peptidase complex subunit 2 (M...   155   9e-38
sp|Q5RAY6|SPCS2_PONPY  Signal peptidase complex subunit 2 (M...   155   9e-38
sp|Q9CYN2|SPCS2_MOUSE  Signal peptidase complex subunit 2 (M...   155   9e-38
sp|Q4R512|SPCS2_MACFA  Signal peptidase complex subunit 2 (M...   155   9e-38
sp|Q5BJI9|SPCS2_BRARE  Probable signal peptidase complex sub...   152   7e-37
sp|Q9VYY2|SPCS2_DROME  Probable signal peptidase complex sub...   109   9e-24
sp|Q615A2|SPCS2_CAEBR  Probable signal peptidase complex sub...    99   1e-20
sp|Q9XWW1|SPCS2_CAEEL  Probable signal peptidase complex sub...    98   2e-20

>sp|Q5M8Y1|SPCS2_XENTR Probable signal peptidase complex subunit 2 (Microsomal signal
           peptidase 25 kDa subunit) (SPase 25 kDa subunit)
          Length = 201

 Score =  157 bits (397), Expect = 3e-38
 Identities = 74/170 (43%), Positives = 109/170 (64%)
 Frame = +3

Query: 12  QMPEKAIKVDKWDTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAV 191
           ++ +K +K+DKWD +A KN+LDD  KK+L E+Y++ E F LIDGRL+I T++ +   VA+
Sbjct: 15  KIDDKPVKIDKWDGSAVKNSLDDAAKKVLLEKYRYVENFCLIDGRLIICTISCVFAIVAL 74

Query: 192 LYDWFYPFPASKLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNF 371
           ++D+ +PFP SK VL +CV+ YF + G+LT Y  + E+S F +AH  D AG+D    W+ 
Sbjct: 75  VWDYLHPFPESKPVLAICVISYFLMMGILTIYTSYKEKSIFLVAHRKDPAGMDPDDIWHL 134

Query: 372 QSKMKKYQDKYELTIKREDLNAKQSNLMTESKSIAEFFDIKGNLRMDILE 521
            S +K++ DKY L +       K       +KSIA FFD  G L MD+ E
Sbjct: 135 SSSLKRFDDKYTLKVTYISGKTKAQRDAEFTKSIARFFDDNGTLVMDLFE 184

>sp|Q28250|SPCS2_CANFA Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
           kDa subunit) (SPase 25 kDa subunit)
          Length = 226

 Score =  155 bits (393), Expect = 9e-38
 Identities = 75/170 (44%), Positives = 106/170 (62%)
 Frame = +3

Query: 12  QMPEKAIKVDKWDTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAV 191
           ++ +K +K+DKWD +A KN+LDD  KK+L E+YK+ E F LIDGRL I T++     VA+
Sbjct: 40  KIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVAL 99

Query: 192 LYDWFYPFPASKLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNF 371
           ++D+ +PFP SK VL +CV+ YF + G+LT Y  + E+S F +AH  D  G+D    W  
Sbjct: 100 IWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQL 159

Query: 372 QSKMKKYQDKYELTIKREDLNAKQSNLMTESKSIAEFFDIKGNLRMDILE 521
            S +K++ DKY L +       KQ      +KSIA+FFD  G L MD  E
Sbjct: 160 SSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYE 209

>sp|Q15005|SPCS2_HUMAN Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
           kDa subunit) (SPase 25 kDa subunit)
          Length = 226

 Score =  155 bits (393), Expect = 9e-38
 Identities = 75/170 (44%), Positives = 106/170 (62%)
 Frame = +3

Query: 12  QMPEKAIKVDKWDTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAV 191
           ++ +K +K+DKWD +A KN+LDD  KK+L E+YK+ E F LIDGRL I T++     VA+
Sbjct: 40  KIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVAL 99

Query: 192 LYDWFYPFPASKLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNF 371
           ++D+ +PFP SK VL +CV+ YF + G+LT Y  + E+S F +AH  D  G+D    W  
Sbjct: 100 IWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQL 159

Query: 372 QSKMKKYQDKYELTIKREDLNAKQSNLMTESKSIAEFFDIKGNLRMDILE 521
            S +K++ DKY L +       KQ      +KSIA+FFD  G L MD  E
Sbjct: 160 SSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYE 209

>sp|Q5RAY6|SPCS2_PONPY Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
           kDa subunit) (SPase 25 kDa subunit)
          Length = 226

 Score =  155 bits (393), Expect = 9e-38
 Identities = 75/170 (44%), Positives = 106/170 (62%)
 Frame = +3

Query: 12  QMPEKAIKVDKWDTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAV 191
           ++ +K +K+DKWD +A KN+LDD  KK+L E+YK+ E F LIDGRL I T++     VA+
Sbjct: 40  KIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVAL 99

Query: 192 LYDWFYPFPASKLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNF 371
           ++D+ +PFP SK VL +CV+ YF + G+LT Y  + E+S F +AH  D  G+D    W  
Sbjct: 100 IWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQL 159

Query: 372 QSKMKKYQDKYELTIKREDLNAKQSNLMTESKSIAEFFDIKGNLRMDILE 521
            S +K++ DKY L +       KQ      +KSIA+FFD  G L MD  E
Sbjct: 160 SSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYE 209

>sp|Q9CYN2|SPCS2_MOUSE Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
           kDa subunit) (SPase 25 kDa subunit)
          Length = 226

 Score =  155 bits (393), Expect = 9e-38
 Identities = 75/170 (44%), Positives = 106/170 (62%)
 Frame = +3

Query: 12  QMPEKAIKVDKWDTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAV 191
           ++ +K +K+DKWD +A KN+LDD  KK+L E+YK+ E F LIDGRL I T++     VA+
Sbjct: 40  KIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVAL 99

Query: 192 LYDWFYPFPASKLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNF 371
           ++D+ +PFP SK VL +CV+ YF + G+LT Y  + E+S F +AH  D  G+D    W  
Sbjct: 100 IWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQL 159

Query: 372 QSKMKKYQDKYELTIKREDLNAKQSNLMTESKSIAEFFDIKGNLRMDILE 521
            S +K++ DKY L +       KQ      +KSIA+FFD  G L MD  E
Sbjct: 160 SSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYE 209

>sp|Q4R512|SPCS2_MACFA Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
           kDa subunit) (SPase 25 kDa subunit)
          Length = 226

 Score =  155 bits (393), Expect = 9e-38
 Identities = 75/170 (44%), Positives = 106/170 (62%)
 Frame = +3

Query: 12  QMPEKAIKVDKWDTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAV 191
           ++ +K +K+DKWD +A KN+LDD  KK+L E+YK+ E F LIDGRL I T++     VA+
Sbjct: 40  KIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVAL 99

Query: 192 LYDWFYPFPASKLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNF 371
           ++D+ +PFP SK VL +CV+ YF + G+LT Y  + E+S F +AH  D  G+D    W  
Sbjct: 100 IWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQL 159

Query: 372 QSKMKKYQDKYELTIKREDLNAKQSNLMTESKSIAEFFDIKGNLRMDILE 521
            S +K++ DKY L +       KQ      +KSIA+FFD  G L MD  E
Sbjct: 160 SSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYE 209

>sp|Q5BJI9|SPCS2_BRARE Probable signal peptidase complex subunit 2 (Microsomal signal
           peptidase 25 kDa subunit) (SPase 25 kDa subunit)
          Length = 201

 Score =  152 bits (385), Expect = 7e-37
 Identities = 76/172 (44%), Positives = 108/172 (62%)
 Frame = +3

Query: 12  QMPEKAIKVDKWDTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAV 191
           ++ EK +K+DKWD  A KN+LDD  KK+L E+Y + E F L+DGRL I TV+ L   VA+
Sbjct: 15  RIDEKPVKIDKWDGAAVKNSLDDAAKKVLIEKYGYLESFNLVDGRLFICTVSCLFTIVAL 74

Query: 192 LYDWFYPFPASKLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNF 371
           ++D+ +PFP SK VL  CV+ YF + G+LT Y  + E++ F +A + D AG+D    W  
Sbjct: 75  IWDYLHPFPESKPVLACCVVSYFIMMGILTLYTSYKEKNIFLVAMQKDPAGMDPDHSWCL 134

Query: 372 QSKMKKYQDKYELTIKREDLNAKQSNLMTESKSIAEFFDIKGNLRMDILEKY 527
            S +K++ D+Y L +   D   KQS     +KS++ FFD  G L MD  EKY
Sbjct: 135 SSSLKRFDDQYTLRMSFTDGKTKQSRETEFTKSVSVFFDENGTLVMDQYEKY 186

>sp|Q9VYY2|SPCS2_DROME Probable signal peptidase complex subunit 2 (Microsomal signal
           peptidase 25 kDa subunit) (SPase 25 kDa subunit)
          Length = 199

 Score =  109 bits (272), Expect = 9e-24
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 1/163 (0%)
 Frame = +3

Query: 12  QMPEKAIKVDKWDTNATKNALDDGFKK-ILKEQYKFEEKFALIDGRLLISTVAVLCGGVA 188
           Q  E+ +KV+KWD +A K+ALDD  K  +L ++ + +E+F L++ RL +  +AV    +A
Sbjct: 9   QQGEELVKVNKWDGSAVKHALDDAVKTCLLGDRPQLKEQFGLVNTRLALCALAVSVAIMA 68

Query: 189 VLYDWFYPFPASKLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWN 368
             +D+ +PFP S+ VL+  VL YFAL G+LT +  F E+ TF +A + D    ++   W 
Sbjct: 69  HAWDFTHPFPESRPVLLFSVLAYFALLGILTLHSSFREKGTFAVALQKDK---ERERLWE 125

Query: 369 FQSKMKKYQDKYELTIKREDLNAKQSNLMTESKSIAEFFDIKG 497
             S M+KY DKY LT+   D    +    + +KS A F D  G
Sbjct: 126 ASSDMRKYDDKYLLTLSVRDTKNGKRREQSSNKSCAAFIDQNG 168

>sp|Q615A2|SPCS2_CAEBR Probable signal peptidase complex subunit 2 (Microsomal signal
           peptidase 25 kDa subunit) (SPase 25 kDa subunit)
          Length = 180

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 57/169 (33%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
 Frame = +3

Query: 21  EKAIKVDKWDTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYD 200
           E+   V+KWD    KN LD+  KKIL ++  + E+  L++ RLLIS + V     A  YD
Sbjct: 4   ERITVVNKWDGPTVKNGLDEVVKKILNDKVGWTEQHNLMNLRLLISFIGVAFSAFACGYD 63

Query: 201 WFYPFPASKLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFQSK 380
           ++ PFP SK+VL+VC + YF   G+L  +  +VE+  F+ A+E D     +  KW + S+
Sbjct: 64  FYAPFPKSKIVLLVCSVSYFICMGVLQLFQWYVEKDCFYEANEVDG---KQTRKWAWSSE 120

Query: 381 MKKYQDKYELTIK-REDLNAKQSNLMTESKSIAEFFDIKGNLRMDILEK 524
           +K + DKY L+ + +++  + Q  ++   KSI  + D  G + + ++++
Sbjct: 121 IKAHDDKYVLSAEFKKEGRSGQGKII---KSIGAYIDNDGEIMIPLVQR 166

>sp|Q9XWW1|SPCS2_CAEEL Probable signal peptidase complex subunit 2 (Microsomal signal
           peptidase 25 kDa subunit) (SPase 25 kDa subunit)
          Length = 180

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 1/171 (0%)
 Frame = +3

Query: 15  MPEKAIKV-DKWDTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAV 191
           M ++ +KV +KWD    KNALD+  KKIL ++  + E   L++ RLLIS + V     A 
Sbjct: 1   MTDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFAC 60

Query: 192 LYDWFYPFPASKLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNF 371
            YD++ PFP SK+VL VC + YF   G+L  Y  +VE+   + A E D     +  KW +
Sbjct: 61  GYDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDG---KQSRKWAW 117

Query: 372 QSKMKKYQDKYELTIKREDLNAKQSNLMTESKSIAEFFDIKGNLRMDILEK 524
            S++K + DKY  T+  E     +S     +KSI  + D  G + + +++K
Sbjct: 118 SSEIKAHDDKY--TLSAEFKKEGRSGQGKITKSIGAYIDNDGEIIVPLVKK 166

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,918,856
Number of Sequences: 369166
Number of extensions: 1440254
Number of successful extensions: 4354
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4337
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00130

Planaria EST Database

DrC_00130

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail