Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_B23
(474 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5BJI9|SPCS2_BRARE Probable signal peptidase complex sub... 59 7e-09
sp|Q5M8Y1|SPCS2_XENTR Probable signal peptidase complex sub... 58 1e-08
sp|Q28250|SPCS2_CANFA Signal peptidase complex subunit 2 (M... 57 2e-08
sp|Q15005|SPCS2_HUMAN Signal peptidase complex subunit 2 (M... 57 2e-08
sp|Q5RAY6|SPCS2_PONPY Signal peptidase complex subunit 2 (M... 57 2e-08
sp|Q9CYN2|SPCS2_MOUSE Signal peptidase complex subunit 2 (M... 57 2e-08
sp|Q4R512|SPCS2_MACFA Signal peptidase complex subunit 2 (M... 57 2e-08
sp|Q9VYY2|SPCS2_DROME Probable signal peptidase complex sub... 39 0.005
sp|Q615A2|SPCS2_CAEBR Probable signal peptidase complex sub... 32 0.74
sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1,... 30 2.8
>sp|Q5BJI9|SPCS2_BRARE Probable signal peptidase complex subunit 2 (Microsomal signal
peptidase 25 kDa subunit) (SPase 25 kDa subunit)
Length = 201
Score = 58.5 bits (140), Expect = 7e-09
Identities = 29/76 (38%), Positives = 42/76 (55%)
Frame = +2
Query: 5 ERSTFFLAHENDTAGLDKPIKWNFQSKMKKYQDKYELTIKREDLNAKQSNVMTESKSIAE 184
E++ F +A + D AG+D W S +K++ D+Y L + D KQS +KS++
Sbjct: 111 EKNIFLVAMQKDPAGMDPDHSWCLSSSLKRFDDQYTLRMSFTDGKTKQSRETEFTKSVSV 170
Query: 185 FFDIKGNLRMDILEKY 232
FFD G L MD EKY
Sbjct: 171 FFDENGTLVMDQYEKY 186
>sp|Q5M8Y1|SPCS2_XENTR Probable signal peptidase complex subunit 2 (Microsomal signal
peptidase 25 kDa subunit) (SPase 25 kDa subunit)
Length = 201
Score = 58.2 bits (139), Expect = 1e-08
Identities = 29/74 (39%), Positives = 39/74 (52%)
Frame = +2
Query: 5 ERSTFFLAHENDTAGLDKPIKWNFQSKMKKYQDKYELTIKREDLNAKQSNVMTESKSIAE 184
E+S F +AH D AG+D W+ S +K++ DKY L + K +KSIA
Sbjct: 111 EKSIFLVAHRKDPAGMDPDDIWHLSSSLKRFDDKYTLKVTYISGKTKAQRDAEFTKSIAR 170
Query: 185 FFDIKGNLRMDILE 226
FFD G L MD+ E
Sbjct: 171 FFDDNGTLVMDLFE 184
>sp|Q28250|SPCS2_CANFA Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
kDa subunit) (SPase 25 kDa subunit)
Length = 226
Score = 57.0 bits (136), Expect = 2e-08
Identities = 29/74 (39%), Positives = 38/74 (51%)
Frame = +2
Query: 5 ERSTFFLAHENDTAGLDKPIKWNFQSKMKKYQDKYELTIKREDLNAKQSNVMTESKSIAE 184
E+S F +AH D G+D W S +K++ DKY L + KQ +KSIA+
Sbjct: 136 EKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAK 195
Query: 185 FFDIKGNLRMDILE 226
FFD G L MD E
Sbjct: 196 FFDHSGTLVMDAYE 209
>sp|Q15005|SPCS2_HUMAN Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
kDa subunit) (SPase 25 kDa subunit)
Length = 226
Score = 57.0 bits (136), Expect = 2e-08
Identities = 29/74 (39%), Positives = 38/74 (51%)
Frame = +2
Query: 5 ERSTFFLAHENDTAGLDKPIKWNFQSKMKKYQDKYELTIKREDLNAKQSNVMTESKSIAE 184
E+S F +AH D G+D W S +K++ DKY L + KQ +KSIA+
Sbjct: 136 EKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAK 195
Query: 185 FFDIKGNLRMDILE 226
FFD G L MD E
Sbjct: 196 FFDHSGTLVMDAYE 209
>sp|Q5RAY6|SPCS2_PONPY Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
kDa subunit) (SPase 25 kDa subunit)
Length = 226
Score = 57.0 bits (136), Expect = 2e-08
Identities = 29/74 (39%), Positives = 38/74 (51%)
Frame = +2
Query: 5 ERSTFFLAHENDTAGLDKPIKWNFQSKMKKYQDKYELTIKREDLNAKQSNVMTESKSIAE 184
E+S F +AH D G+D W S +K++ DKY L + KQ +KSIA+
Sbjct: 136 EKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAK 195
Query: 185 FFDIKGNLRMDILE 226
FFD G L MD E
Sbjct: 196 FFDHSGTLVMDAYE 209
>sp|Q9CYN2|SPCS2_MOUSE Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
kDa subunit) (SPase 25 kDa subunit)
Length = 226
Score = 57.0 bits (136), Expect = 2e-08
Identities = 29/74 (39%), Positives = 38/74 (51%)
Frame = +2
Query: 5 ERSTFFLAHENDTAGLDKPIKWNFQSKMKKYQDKYELTIKREDLNAKQSNVMTESKSIAE 184
E+S F +AH D G+D W S +K++ DKY L + KQ +KSIA+
Sbjct: 136 EKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAK 195
Query: 185 FFDIKGNLRMDILE 226
FFD G L MD E
Sbjct: 196 FFDHSGTLVMDAYE 209
>sp|Q4R512|SPCS2_MACFA Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
kDa subunit) (SPase 25 kDa subunit)
Length = 226
Score = 57.0 bits (136), Expect = 2e-08
Identities = 29/74 (39%), Positives = 38/74 (51%)
Frame = +2
Query: 5 ERSTFFLAHENDTAGLDKPIKWNFQSKMKKYQDKYELTIKREDLNAKQSNVMTESKSIAE 184
E+S F +AH D G+D W S +K++ DKY L + KQ +KSIA+
Sbjct: 136 EKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAK 195
Query: 185 FFDIKGNLRMDILE 226
FFD G L MD E
Sbjct: 196 FFDHSGTLVMDAYE 209
>sp|Q9VYY2|SPCS2_DROME Probable signal peptidase complex subunit 2 (Microsomal signal
peptidase 25 kDa subunit) (SPase 25 kDa subunit)
Length = 199
Score = 39.3 bits (90), Expect = 0.005
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 5 ERSTFFLAHENDTAGLDKPIKWNFQSKMKKYQDKYELTIKREDLNAKQSNVMTESKSIAE 184
E+ TF +A + D ++ W S M+KY DKY LT+ D + + +KS A
Sbjct: 106 EKGTFAVALQKDK---ERERLWEASSDMRKYDDKYLLTLSVRDTKNGKRREQSSNKSCAA 162
Query: 185 FFDIKG 202
F D G
Sbjct: 163 FIDQNG 168
>sp|Q615A2|SPCS2_CAEBR Probable signal peptidase complex subunit 2 (Microsomal signal
peptidase 25 kDa subunit) (SPase 25 kDa subunit)
Length = 180
Score = 32.0 bits (71), Expect = 0.74
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +2
Query: 2 VERSTFFLAHENDTAGLDKPIKWNFQSKMKKYQDKYELTIK-REDLNAKQSNVMTESKSI 178
VE+ F+ A+E D + KW + S++K + DKY L+ + +++ + Q ++ KSI
Sbjct: 96 VEKDCFYEANEVDGK---QTRKWAWSSEIKAHDDKYVLSAEFKKEGRSGQGKII---KSI 149
Query: 179 AEFFDIKGNLRMDILEK 229
+ D G + + ++++
Sbjct: 150 GAYIDNDGEIMIPLVQR 166
>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplast precursor (OEE2)
(23 kDa subunit of oxygen evolving system of photosystem
II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane)
Length = 268
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = +2
Query: 5 ERSTFFLAHENDTAGLDKPIKWN------FQSKMKKYQDKYELTIKREDLNAKQSNVMTE 166
+ +T FLA+ D L P KWN F ++ +Y+D ++ T N + T+
Sbjct: 95 KENTDFLAYNGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDST-----SNLIVTVTPTD 149
Query: 167 SKSIAEF 187
KSI ++
Sbjct: 150 KKSITDY 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,578,780
Number of Sequences: 369166
Number of extensions: 764723
Number of successful extensions: 2161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2142
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)