DrC_00089
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00089 (951 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence ele... 36 0.18 sp|Q45119|TNPA2_BACFR Transposase for insertion sequence el... 36 0.18 sp|P27571|XIST_MOUSE X inactive-specific transcript protein 34 0.53 sp|Q14203|DYNA_HUMAN Dynactin-1 (150 kDa dynein-associated ... 32 2.0 sp|O43315|AQP9_HUMAN Aquaporin 9 (Small solute channel 1) 32 2.0 sp|P28023|DYNA_RAT Dynactin-1 (150 kDa dynein-associated po... 32 2.0 sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest... 32 2.6 sp|O60673|DPOZ_HUMAN DNA polymerase zeta catalytic subunit ... 32 2.6 sp|P70279|SURF6_MOUSE Surfeit locus protein 6 32 3.4 sp|Q600N3|RUVB_MYCH2 Holliday junction DNA helicase ruvB 32 3.4
>sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence element IS21-like Length = 519 Score = 35.8 bits (81), Expect = 0.18 Identities = 16/42 (38%), Positives = 27/42 (64%) Frame = +3 Query: 615 PTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNK 740 P +SAA+++ L+E P+ PRV +RTI + R++ + G K Sbjct: 82 PYISAARIHDWLKECYPDFPRVCNRTISGFVERVRKKYGIGK 123
>sp|Q45119|TNPA2_BACFR Transposase for insertion sequence element IS21-like Length = 520 Score = 35.8 bits (81), Expect = 0.18 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 14/105 (13%) Frame = +3 Query: 468 KQMQAKLPNKPRVS-----DRTIVHVISR-----LQLRQGRNKIDDEMTGAVVDIVRND- 614 +++Q+K NK ++ DR+ V R L +Q ++ + G + VR Sbjct: 19 RELQSKGLNKTQIGKYLGVDRSTVRRYLRTSREELFRKQNSHREYELKLGKYEEYVRGTL 78 Query: 615 ---PTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNK 740 P +SAA+++ L+E P+ PRV D+T+ + R++ + G K Sbjct: 79 EEYPYISAARMHDWLKECYPDFPRVCDKTVFNFVDRIRRKYGIGK 123
>sp|P27571|XIST_MOUSE X inactive-specific transcript protein Length = 298 Score = 34.3 bits (77), Expect = 0.53 Identities = 29/110 (26%), Positives = 48/110 (43%) Frame = -3 Query: 805 VHSPLMHSVLIDYYCSVTSSSILFRPCRDCNLDITLLMVLSVTLGLFGSISRNIAFTFAA 626 V + L+H L + C + S LF C C L I + ++ ++ +S ++ ++A Sbjct: 74 VSNSLLHLFLPSFACLLLSFVCLF--CLQCVLPIPMFLLHVLSCRALSFVSLSLVPVWSA 131 Query: 625 LNVGSLRTMSTTAPVISSSILFRPCRNCNLDITCTMVLSLTLGLFGSFAC 476 L+ ++ IS S F P +L +TC M SL L L C Sbjct: 132 LSSLAMALCFIYLVAISLSFSFTPAFRDSLWVTCCMHPSLFLVLTPLVLC 181
>sp|Q14203|DYNA_HUMAN Dynactin-1 (150 kDa dynein-associated polypeptide) (DP-150) (DAP-150) (p150-glued) (p135) Length = 1278 Score = 32.3 bits (72), Expect = 2.0 Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 3/190 (1%) Frame = +3 Query: 201 EVADAERVAMIGQLMKQHRGISVEQLESALIEAFPERAALGTAEISDL---IRLNKWRKL 371 + ADA +A + + M + R S++Q +EA ER T ++ L I Sbjct: 299 DTADAIEMATLDKEMAEERAESLQQE----VEALKERVDELTTDLEILKAEIEEKGSDGA 354 Query: 372 GQAVNVKVDEEMEEMIRDLIRNDASITLSNINKQMQAKLPNKPRVSDRTIVHVISRLQLR 551 + +K EE ++D + LS+ KQ KL ++ + V R Sbjct: 355 ASSYQLKQLEEQNARLKDALVRMRD--LSSSEKQEHVKLQKLMEKKNQELEVV------R 406 Query: 552 QGRNKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQG 731 Q R ++ +E++ A I + AA + EML ++ + +R + + + Sbjct: 407 QQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEA 466 Query: 732 RNKIDDEVTE 761 N+++DE+ E Sbjct: 467 MNEMNDELQE 476
>sp|O43315|AQP9_HUMAN Aquaporin 9 (Small solute channel 1) Length = 295 Score = 32.3 bits (72), Expect = 2.0 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 14/94 (14%) Frame = +3 Query: 84 GSTIRSHLMATFPHKPVISANS--------------VYSLIRKHNLGAPRGVEEVADAER 221 G +H+ AT+P + AN+ V+++ NLGAPRG+E +A Sbjct: 140 GENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFDSRNLGAPRGLEPIAIGLL 199 Query: 222 VAMIGQLMKQHRGISVEQLESALIEAFPERAALG 323 + +I + + G ++ F A G Sbjct: 200 IIVIASSLGLNSGCAMNPARDLSPRLFTALAGWG 233
>sp|P28023|DYNA_RAT Dynactin-1 (150 kDa dynein-associated polypeptide) (DP-150) (DAP-150) (p150-glued) Length = 1280 Score = 32.3 bits (72), Expect = 2.0 Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 3/190 (1%) Frame = +3 Query: 201 EVADAERVAMIGQLMKQHRGISVEQLESALIEAFPERAALGTAEISDL---IRLNKWRKL 371 + ADA +A + + M + R S++Q +EA ER T ++ L I Sbjct: 298 DTADAIEMATLDKEMAEERAESLQQE----VEALKERVDELTTDLEILKAEIEEKGSDGA 353 Query: 372 GQAVNVKVDEEMEEMIRDLIRNDASITLSNINKQMQAKLPNKPRVSDRTIVHVISRLQLR 551 + +K EE ++D + LS+ KQ KL ++ + V R Sbjct: 354 ASSYQLKQLEEQNARLKDALVRMRD--LSSSEKQEHVKLQKLMEKKNQELEVV------R 405 Query: 552 QGRNKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQG 731 Q R ++ +E++ A I + AA + EML ++ + +R + + + Sbjct: 406 QQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEA 465 Query: 732 RNKIDDEVTE 761 N+++DE+ E Sbjct: 466 MNEMNDELQE 475
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest subunit Length = 1840 Score = 32.0 bits (71), Expect = 2.6 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Frame = +3 Query: 507 SDRTIVHVISRLQLRQGRNKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVTD 686 S+ + H ++ + +R N E GA I+ L + LP +PR T Sbjct: 270 SEDDLTHQLAMI-IRHNENLKRQEKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQ 328 Query: 687 ---RTIRRVISRLQSRQGR 734 R I+ + SRL++++GR Sbjct: 329 KSGRPIKSICSRLKAKEGR 347
>sp|O60673|DPOZ_HUMAN DNA polymerase zeta catalytic subunit (hREV3) Length = 3130 Score = 32.0 bits (71), Expect = 2.6 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 11/157 (7%) Frame = +3 Query: 246 KQHRGISVEQLESALIEAFPERAALGTAEISDLIRLNKWRKLGQAVNVKVDEEME----E 413 K H S + S + PE T + ++ R N+W+ + + + M+ + Sbjct: 1708 KHHTTDSASWIRSGTLS--PEIFEKSTIDSNENRRHNQWKNSFHPLTTRSNSIMDSFCVQ 1765 Query: 414 MIRDLIRNDASITLSNINKQMQAKLPNKPRVSDRTIVHVISRLQLRQGRNKIDDEMT--- 584 D + + + S+++K++ LP +P SD H +R ++ Q + + T Sbjct: 1766 QAEDCLSEKSRLNRSSVSKEVFLSLP-QPNNSDWIQGH--TRKEMGQSLDSANTSFTAIL 1822 Query: 585 ----GAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVT 683 G +VD+ D L ++ N ML + PR T Sbjct: 1823 SSPDGELVDVACEDLELYVSRNNDMLTPTPDSSPRST 1859
>sp|P70279|SURF6_MOUSE Surfeit locus protein 6 Length = 355 Score = 31.6 bits (70), Expect = 3.4 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +3 Query: 594 VDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNKIDDEVTEQ 764 V++ +P A + +++ N +T R R+++ RLQ+RQGR DE+ +Q Sbjct: 197 VEVTEEEPASKAQRKKEKRQKVKGNLTPLTGRNYRQLLDRLQARQGRL---DELRDQ 250
>sp|Q600N3|RUVB_MYCH2 Holliday junction DNA helicase ruvB Length = 318 Score = 31.6 bits (70), Expect = 3.4 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 6/137 (4%) Frame = +3 Query: 312 AALGTAEISDLIRLNKWRKLGQAVNVKVDEEMEEMIRDLIRNDASITLSNINKQMQAKLP 491 A L +I +++ + + + + MEE + DL I + K M+ KLP Sbjct: 83 AVLANISPDTIIFIDEIHGINKNIEELLYSAMEEFVIDL-----QIGVDGERKIMRMKLP 137 Query: 492 NKPRVSDRT-IVHVISRLQLRQGR-NKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLP 665 + T + + + LQ R G KI D ++ I+RN + K+N + + + Sbjct: 138 QFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQIIRNSSAVLKLKMNTEIIKYIA 197 Query: 666 ----NKPRVTDRTIRRV 704 N PR+ + ++R+ Sbjct: 198 SFSNNTPRIANNLLKRI 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,590,047
Number of Sequences: 369166
Number of extensions: 2175451
Number of successful extensions: 6550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6544
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9895030780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
