Planaria EST Database


DrC_00089

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00089
         (951 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q64NF0|TPA1_BACFR  Transposase for insertion sequence ele...    36   0.18 
sp|Q45119|TNPA2_BACFR  Transposase for insertion sequence el...    36   0.18 
sp|P27571|XIST_MOUSE  X inactive-specific transcript protein       34   0.53 
sp|Q14203|DYNA_HUMAN  Dynactin-1 (150 kDa dynein-associated ...    32   2.0  
sp|O43315|AQP9_HUMAN  Aquaporin 9 (Small solute channel 1)         32   2.0  
sp|P28023|DYNA_RAT  Dynactin-1 (150 kDa dynein-associated po...    32   2.0  
sp|P18616|RPB1_ARATH  DNA-directed RNA polymerase II largest...    32   2.6  
sp|O60673|DPOZ_HUMAN  DNA polymerase zeta catalytic subunit ...    32   2.6  
sp|P70279|SURF6_MOUSE  Surfeit locus protein 6                     32   3.4  
sp|Q600N3|RUVB_MYCH2  Holliday junction DNA helicase ruvB          32   3.4  
>sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence element IS21-like
          Length = 519

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +3

Query: 615 PTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNK 740
           P +SAA+++  L+E  P+ PRV +RTI   + R++ + G  K
Sbjct: 82  PYISAARIHDWLKECYPDFPRVCNRTISGFVERVRKKYGIGK 123
>sp|Q45119|TNPA2_BACFR Transposase for insertion sequence element IS21-like
          Length = 520

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
 Frame = +3

Query: 468 KQMQAKLPNKPRVS-----DRTIVHVISR-----LQLRQGRNKIDDEMTGAVVDIVRND- 614
           +++Q+K  NK ++      DR+ V    R     L  +Q  ++  +   G   + VR   
Sbjct: 19  RELQSKGLNKTQIGKYLGVDRSTVRRYLRTSREELFRKQNSHREYELKLGKYEEYVRGTL 78

Query: 615 ---PTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNK 740
              P +SAA+++  L+E  P+ PRV D+T+   + R++ + G  K
Sbjct: 79  EEYPYISAARMHDWLKECYPDFPRVCDKTVFNFVDRIRRKYGIGK 123
>sp|P27571|XIST_MOUSE X inactive-specific transcript protein
          Length = 298

 Score = 34.3 bits (77), Expect = 0.53
 Identities = 29/110 (26%), Positives = 48/110 (43%)
 Frame = -3

Query: 805 VHSPLMHSVLIDYYCSVTSSSILFRPCRDCNLDITLLMVLSVTLGLFGSISRNIAFTFAA 626
           V + L+H  L  + C + S   LF  C  C L I + ++  ++      +S ++   ++A
Sbjct: 74  VSNSLLHLFLPSFACLLLSFVCLF--CLQCVLPIPMFLLHVLSCRALSFVSLSLVPVWSA 131

Query: 625 LNVGSLRTMSTTAPVISSSILFRPCRNCNLDITCTMVLSLTLGLFGSFAC 476
           L+  ++         IS S  F P    +L +TC M  SL L L     C
Sbjct: 132 LSSLAMALCFIYLVAISLSFSFTPAFRDSLWVTCCMHPSLFLVLTPLVLC 181
>sp|Q14203|DYNA_HUMAN Dynactin-1 (150 kDa dynein-associated polypeptide) (DP-150)
           (DAP-150) (p150-glued) (p135)
          Length = 1278

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 3/190 (1%)
 Frame = +3

Query: 201 EVADAERVAMIGQLMKQHRGISVEQLESALIEAFPERAALGTAEISDL---IRLNKWRKL 371
           + ADA  +A + + M + R  S++Q     +EA  ER    T ++  L   I        
Sbjct: 299 DTADAIEMATLDKEMAEERAESLQQE----VEALKERVDELTTDLEILKAEIEEKGSDGA 354

Query: 372 GQAVNVKVDEEMEEMIRDLIRNDASITLSNINKQMQAKLPNKPRVSDRTIVHVISRLQLR 551
             +  +K  EE    ++D +       LS+  KQ   KL       ++ +  V      R
Sbjct: 355 ASSYQLKQLEEQNARLKDALVRMRD--LSSSEKQEHVKLQKLMEKKNQELEVV------R 406

Query: 552 QGRNKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQG 731
           Q R ++ +E++ A   I      + AA     + EML ++    +  +R +   +   + 
Sbjct: 407 QQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEA 466

Query: 732 RNKIDDEVTE 761
            N+++DE+ E
Sbjct: 467 MNEMNDELQE 476
>sp|O43315|AQP9_HUMAN Aquaporin 9 (Small solute channel 1)
          Length = 295

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
 Frame = +3

Query: 84  GSTIRSHLMATFPHKPVISANS--------------VYSLIRKHNLGAPRGVEEVADAER 221
           G    +H+ AT+P   +  AN+              V+++    NLGAPRG+E +A    
Sbjct: 140 GENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFDSRNLGAPRGLEPIAIGLL 199

Query: 222 VAMIGQLMKQHRGISVEQLESALIEAFPERAALG 323
           + +I   +  + G ++          F   A  G
Sbjct: 200 IIVIASSLGLNSGCAMNPARDLSPRLFTALAGWG 233
>sp|P28023|DYNA_RAT Dynactin-1 (150 kDa dynein-associated polypeptide) (DP-150)
           (DAP-150) (p150-glued)
          Length = 1280

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 3/190 (1%)
 Frame = +3

Query: 201 EVADAERVAMIGQLMKQHRGISVEQLESALIEAFPERAALGTAEISDL---IRLNKWRKL 371
           + ADA  +A + + M + R  S++Q     +EA  ER    T ++  L   I        
Sbjct: 298 DTADAIEMATLDKEMAEERAESLQQE----VEALKERVDELTTDLEILKAEIEEKGSDGA 353

Query: 372 GQAVNVKVDEEMEEMIRDLIRNDASITLSNINKQMQAKLPNKPRVSDRTIVHVISRLQLR 551
             +  +K  EE    ++D +       LS+  KQ   KL       ++ +  V      R
Sbjct: 354 ASSYQLKQLEEQNARLKDALVRMRD--LSSSEKQEHVKLQKLMEKKNQELEVV------R 405

Query: 552 QGRNKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQG 731
           Q R ++ +E++ A   I      + AA     + EML ++    +  +R +   +   + 
Sbjct: 406 QQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEA 465

Query: 732 RNKIDDEVTE 761
            N+++DE+ E
Sbjct: 466 MNEMNDELQE 475
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest subunit
          Length = 1840

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 507 SDRTIVHVISRLQLRQGRNKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVTD 686
           S+  + H ++ + +R   N    E  GA   I+     L    +       LP +PR T 
Sbjct: 270 SEDDLTHQLAMI-IRHNENLKRQEKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQ 328

Query: 687 ---RTIRRVISRLQSRQGR 734
              R I+ + SRL++++GR
Sbjct: 329 KSGRPIKSICSRLKAKEGR 347
>sp|O60673|DPOZ_HUMAN DNA polymerase zeta catalytic subunit (hREV3)
          Length = 3130

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
 Frame = +3

Query: 246  KQHRGISVEQLESALIEAFPERAALGTAEISDLIRLNKWRKLGQAVNVKVDEEME----E 413
            K H   S   + S  +   PE     T + ++  R N+W+     +  + +  M+    +
Sbjct: 1708 KHHTTDSASWIRSGTLS--PEIFEKSTIDSNENRRHNQWKNSFHPLTTRSNSIMDSFCVQ 1765

Query: 414  MIRDLIRNDASITLSNINKQMQAKLPNKPRVSDRTIVHVISRLQLRQGRNKIDDEMT--- 584
               D +   + +  S+++K++   LP +P  SD    H  +R ++ Q  +  +   T   
Sbjct: 1766 QAEDCLSEKSRLNRSSVSKEVFLSLP-QPNNSDWIQGH--TRKEMGQSLDSANTSFTAIL 1822

Query: 585  ----GAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVT 683
                G +VD+   D  L  ++ N ML     + PR T
Sbjct: 1823 SSPDGELVDVACEDLELYVSRNNDMLTPTPDSSPRST 1859
>sp|P70279|SURF6_MOUSE Surfeit locus protein 6
          Length = 355

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +3

Query: 594 VDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNKIDDEVTEQ 764
           V++   +P   A +     +++  N   +T R  R+++ RLQ+RQGR    DE+ +Q
Sbjct: 197 VEVTEEEPASKAQRKKEKRQKVKGNLTPLTGRNYRQLLDRLQARQGRL---DELRDQ 250
>sp|Q600N3|RUVB_MYCH2 Holliday junction DNA helicase ruvB
          Length = 318

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
 Frame = +3

Query: 312 AALGTAEISDLIRLNKWRKLGQAVNVKVDEEMEEMIRDLIRNDASITLSNINKQMQAKLP 491
           A L       +I +++   + + +   +   MEE + DL      I +    K M+ KLP
Sbjct: 83  AVLANISPDTIIFIDEIHGINKNIEELLYSAMEEFVIDL-----QIGVDGERKIMRMKLP 137

Query: 492 NKPRVSDRT-IVHVISRLQLRQGR-NKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLP 665
               +   T +  + + LQ R G   KI D     ++ I+RN   +   K+N  + + + 
Sbjct: 138 QFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQIIRNSSAVLKLKMNTEIIKYIA 197

Query: 666 ----NKPRVTDRTIRRV 704
               N PR+ +  ++R+
Sbjct: 198 SFSNNTPRIANNLLKRI 214
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,590,047
Number of Sequences: 369166
Number of extensions: 2175451
Number of successful extensions: 6550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6544
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9895030780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00089

  1. Dr_sW_028_L20
  2. Dr_sW_003_E14
  3. Dr_sW_001_D11
  4. Dr_sW_003_G09