Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_E14
(866 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence ele... 36 0.16
sp|Q45119|TNPA2_BACFR Transposase for insertion sequence el... 35 0.21
sp|P27571|XIST_MOUSE X inactive-specific transcript protein 34 0.46
sp|Q14203|DYNA_HUMAN Dynactin-1 (150 kDa dynein-associated ... 33 1.3
sp|P28023|DYNA_RAT Dynactin-1 (150 kDa dynein-associated po... 33 1.3
sp|O43315|AQP9_HUMAN Aquaporin 9 (Small solute channel 1) 32 1.7
sp|Q600N3|RUVB_MYCH2 Holliday junction DNA helicase ruvB 32 2.3
sp|P70279|SURF6_MOUSE Surfeit locus protein 6 32 3.0
sp|P15541|AMPN_RABIT Aminopeptidase N (rbAPN) (Alanyl amino... 32 3.0
sp|O60673|DPOZ_HUMAN DNA polymerase zeta catalytic subunit ... 31 3.9
>sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence element IS21-like
Length = 519
Score = 35.8 bits (81), Expect = 0.16
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 615 PTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNK 740
P +SAA+++ L+E P+ PRV +RTI + R++ + G K
Sbjct: 82 PYISAARIHDWLKECYPDFPRVCNRTISGFVERVRKKYGIGK 123
>sp|Q45119|TNPA2_BACFR Transposase for insertion sequence element IS21-like
Length = 520
Score = 35.4 bits (80), Expect = 0.21
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 615 PTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNK 740
P +SAA+++ L+E P+ PRV D+T+ + R++ + G K
Sbjct: 82 PYISAARMHDWLKECYPDFPRVCDKTVFNFVDRIRRKYGIGK 123
>sp|P27571|XIST_MOUSE X inactive-specific transcript protein
Length = 298
Score = 34.3 bits (77), Expect = 0.46
Identities = 29/110 (26%), Positives = 48/110 (43%)
Frame = -2
Query: 805 VHSPLMHSVLIDYYCSVTSSSILFRPCRDCNLDITLLMVLSVTLGLFGSISRNIAFTFAA 626
V + L+H L + C + S LF C C L I + ++ ++ +S ++ ++A
Sbjct: 74 VSNSLLHLFLPSFACLLLSFVCLF--CLQCVLPIPMFLLHVLSCRALSFVSLSLVPVWSA 131
Query: 625 LNVGSLRTMSTTAPVISSSIFFRPCRNCNLDITCTMVLSLTLGLFGSFAC 476
L+ ++ IS S F P +L +TC M SL L L C
Sbjct: 132 LSSLAMALCFIYLVAISLSFSFTPAFRDSLWVTCCMHPSLFLVLTPLVLC 181
>sp|Q14203|DYNA_HUMAN Dynactin-1 (150 kDa dynein-associated polypeptide) (DP-150)
(DAP-150) (p150-glued) (p135)
Length = 1278
Score = 32.7 bits (73), Expect = 1.3
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 3/190 (1%)
Frame = +3
Query: 201 EVADAERVAMIGQLMKQHRGISVEQLESALIEAFPERAALGTAEISDL---IRLNKWRKL 371
+ ADA +A + + M + R S++Q +EA ER T ++ L I
Sbjct: 299 DTADAIEMATLDKEMAEERAESLQQE----VEALKERVDELTTDLEILKAEIEEKGSDGA 354
Query: 372 GQAVNVKVDEEMEEMIRDLIRNDASITLSNINKQMQAKLPNKPRVSDRTIVHVISRLQLR 551
+ +K EE ++D + LS+ KQ KL ++ + V R
Sbjct: 355 ASSYQLKQLEEQNARLKDALVRMRD--LSSSEKQEHVKLQKLMEKKNQELEVV------R 406
Query: 552 QGRKKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQG 731
Q R+++ +E++ A I + AA + EML ++ + +R + + +
Sbjct: 407 QQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEA 466
Query: 732 RNKIDDEVTE 761
N+++DE+ E
Sbjct: 467 MNEMNDELQE 476
>sp|P28023|DYNA_RAT Dynactin-1 (150 kDa dynein-associated polypeptide) (DP-150)
(DAP-150) (p150-glued)
Length = 1280
Score = 32.7 bits (73), Expect = 1.3
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 3/190 (1%)
Frame = +3
Query: 201 EVADAERVAMIGQLMKQHRGISVEQLESALIEAFPERAALGTAEISDL---IRLNKWRKL 371
+ ADA +A + + M + R S++Q +EA ER T ++ L I
Sbjct: 298 DTADAIEMATLDKEMAEERAESLQQE----VEALKERVDELTTDLEILKAEIEEKGSDGA 353
Query: 372 GQAVNVKVDEEMEEMIRDLIRNDASITLSNINKQMQAKLPNKPRVSDRTIVHVISRLQLR 551
+ +K EE ++D + LS+ KQ KL ++ + V R
Sbjct: 354 ASSYQLKQLEEQNARLKDALVRMRD--LSSSEKQEHVKLQKLMEKKNQELEVV------R 405
Query: 552 QGRKKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQG 731
Q R+++ +E++ A I + AA + EML ++ + +R + + +
Sbjct: 406 QQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEA 465
Query: 732 RNKIDDEVTE 761
N+++DE+ E
Sbjct: 466 MNEMNDELQE 475
>sp|O43315|AQP9_HUMAN Aquaporin 9 (Small solute channel 1)
Length = 295
Score = 32.3 bits (72), Expect = 1.7
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Frame = +3
Query: 84 GSTIRSHLMATFPHKPVISANS--------------VYSLIRKHNLGAPRGVEEVADAER 221
G +H+ AT+P + AN+ V+++ NLGAPRG+E +A
Sbjct: 140 GENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFDSRNLGAPRGLEPIAIGLL 199
Query: 222 VAMIGQLMKQHRGISVEQLESALIEAFPERAALG 323
+ +I + + G ++ F A G
Sbjct: 200 IIVIASSLGLNSGCAMNPARDLSPRLFTALAGWG 233
>sp|Q600N3|RUVB_MYCH2 Holliday junction DNA helicase ruvB
Length = 318
Score = 32.0 bits (71), Expect = 2.3
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Frame = +3
Query: 312 AALGTAEISDLIRLNKWRKLGQAVNVKVDEEMEEMIRDLIRNDASITLSNINKQMQAKLP 491
A L +I +++ + + + + MEE + DL I + K M+ KLP
Sbjct: 83 AVLANISPDTIIFIDEIHGINKNIEELLYSAMEEFVIDL-----QIGVDGERKIMRMKLP 137
Query: 492 NKPRVSDRT-IVHVISRLQLRQGR-KKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLP 665
+ T + + + LQ R G KI D ++ I+RN + K+N + + +
Sbjct: 138 QFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQIIRNSSAVLKLKMNTEIIKYIA 197
Query: 666 ----NKPRVTDRTIRRV 704
N PR+ + ++R+
Sbjct: 198 SFSNNTPRIANNLLKRI 214
>sp|P70279|SURF6_MOUSE Surfeit locus protein 6
Length = 355
Score = 31.6 bits (70), Expect = 3.0
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +3
Query: 594 VDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNKIDDEVTEQ 764
V++ +P A + +++ N +T R R+++ RLQ+RQGR DE+ +Q
Sbjct: 197 VEVTEEEPASKAQRKKEKRQKVKGNLTPLTGRNYRQLLDRLQARQGRL---DELRDQ 250
>sp|P15541|AMPN_RABIT Aminopeptidase N (rbAPN) (Alanyl aminopeptidase) (Microsomal
aminopeptidase) (Aminopeptidase M) (Leukemia antigen
CD13)
Length = 966
Score = 31.6 bits (70), Expect = 3.0
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Frame = +3
Query: 138 SANSVYSLIRKHNLGAPRGVEEVADAERVAMIGQLMKQHRGISVEQLESALI--EAFPER 311
S +V +L H L +P +EV +++ + + +G SV ++ S+ + + F E
Sbjct: 438 SVMAVDALASSHPLSSP--ADEVNTPAQISELFDSITYSKGASVLRMLSSFLTEDLFKEG 495
Query: 312 AA--LGTAEISDLIRLNKWRKLGQAVNVKVDEEMEEMIRDLI 431
A L T + I L+ W L QAVN + ++ +RD++
Sbjct: 496 LASYLHTFAYQNTIYLDLWEHLQQAVNSQSAIQLPASVRDIM 537
>sp|O60673|DPOZ_HUMAN DNA polymerase zeta catalytic subunit (hREV3)
Length = 3130
Score = 31.2 bits (69), Expect = 3.9
Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Frame = +3
Query: 246 KQHRGISVEQLESALIEAFPERAALGTAEISDLIRLNKWRKLGQAVNVKVDEEME----E 413
K H S + S + PE T + ++ R N+W+ + + + M+ +
Sbjct: 1708 KHHTTDSASWIRSGTLS--PEIFEKSTIDSNENRRHNQWKNSFHPLTTRSNSIMDSFCVQ 1765
Query: 414 MIRDLIRNDASITLSNINKQMQAKLPNKPRVSDRTIVHVISRLQLRQGRKKIDDEMT--- 584
D + + + S+++K++ LP +P SD H +R ++ Q + T
Sbjct: 1766 QAEDCLSEKSRLNRSSVSKEVFLSLP-QPNNSDWIQGH--TRKEMGQSLDSANTSFTAIL 1822
Query: 585 ----GAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVT 683
G +VD+ D L ++ N ML + PR T
Sbjct: 1823 SSPDGELVDVACEDLELYVSRNNDMLTPTPDSSPRST 1859
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,006,813
Number of Sequences: 369166
Number of extensions: 1932850
Number of successful extensions: 6063
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6057
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)