Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_G09
(525 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence ele... 36 0.065
sp|Q45119|TNPA2_BACFR Transposase for insertion sequence el... 36 0.065
sp|P27571|XIST_MOUSE X inactive-specific transcript protein 34 0.19
sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest... 32 0.93
sp|P70279|SURF6_MOUSE Surfeit locus protein 6 32 1.2
sp|Q03103|ERO1_YEAST Endoplasmic oxidoreductin 1 precursor ... 31 1.6
sp|P15530|CD79B_MOUSE B-cell antigen receptor complex-assoc... 30 4.6
sp|Q09501|IFP1_CAEEL Intermediate filament protein ifp-1 (I... 30 4.6
sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein p... 30 4.6
sp|P53950|VAC7_YEAST Vacuolar segregation protein 7 29 6.0
>sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence element IS21-like
Length = 519
Score = 35.8 bits (81), Expect = 0.065
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1
Query: 193 PTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNK 318
P +SAA+++ L+E P+ PRV +RTI + R++ + G K
Sbjct: 82 PYISAARIHDWLKECYPDFPRVCNRTISGFVERVRKKYGIGK 123
>sp|Q45119|TNPA2_BACFR Transposase for insertion sequence element IS21-like
Length = 520
Score = 35.8 bits (81), Expect = 0.065
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
Frame = +1
Query: 46 KQMQAKLPNKPRVS-----DRTIVHVISR-----LQLRQGRNKIDDEMTGAVVDIVRND- 192
+++Q+K NK ++ DR+ V R L +Q ++ + G + VR
Sbjct: 19 RELQSKGLNKTQIGKYLGVDRSTVRRYLRTSREELFRKQNSHREYELKLGKYEEYVRGTL 78
Query: 193 ---PTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNK 318
P +SAA+++ L+E P+ PRV D+T+ + R++ + G K
Sbjct: 79 EEYPYISAARMHDWLKECYPDFPRVCDKTVFNFVDRIRRKYGIGK 123
>sp|P27571|XIST_MOUSE X inactive-specific transcript protein
Length = 298
Score = 34.3 bits (77), Expect = 0.19
Identities = 29/110 (26%), Positives = 48/110 (43%)
Frame = -2
Query: 383 VHSPLMHSVLIDYYCSVTSSSILFRPCRDCNLDITLLMVLSVTLGLFGSISRNIAFTFAA 204
V + L+H L + C + S LF C C L I + ++ ++ +S ++ ++A
Sbjct: 74 VSNSLLHLFLPSFACLLLSFVCLF--CLQCVLPIPMFLLHVLSCRALSFVSLSLVPVWSA 131
Query: 203 LNVGSLRTMSTTAPVISSSILFRPCRNCNLDITCTMVLSLTLGLFGSFAC 54
L+ ++ IS S F P +L +TC M SL L L C
Sbjct: 132 LSSLAMALCFIYLVAISLSFSFTPAFRDSLWVTCCMHPSLFLVLTPLVLC 181
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest subunit
Length = 1840
Score = 32.0 bits (71), Expect = 0.93
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 85 SDRTIVHVISRLQLRQGRNKIDDEMTGAVVDIVRNDPTLSAAKVNAMLREMLPNKPRVTD 264
S+ + H ++ + +R N E GA I+ L + LP +PR T
Sbjct: 270 SEDDLTHQLAMI-IRHNENLKRQEKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQ 328
Query: 265 ---RTIRRVISRLQSRQGR 312
R I+ + SRL++++GR
Sbjct: 329 KSGRPIKSICSRLKAKEGR 347
>sp|P70279|SURF6_MOUSE Surfeit locus protein 6
Length = 355
Score = 31.6 bits (70), Expect = 1.2
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 172 VDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGRNKIDDEVTEQ 342
V++ +P A + +++ N +T R R+++ RLQ+RQGR DE+ +Q
Sbjct: 197 VEVTEEEPASKAQRKKEKRQKVKGNLTPLTGRNYRQLLDRLQARQGRL---DELRDQ 250
>sp|Q03103|ERO1_YEAST Endoplasmic oxidoreductin 1 precursor (Endoplasmic oxidoreductase
protein 1)
Length = 563
Score = 31.2 bits (69), Expect = 1.6
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +2
Query: 386 LWELLPYKP--SFCDLLHRSIDNLVINLTVQ 472
LW++ PY P SFCDL+++ I N + N+ Q
Sbjct: 282 LWKIQPYLPEFSFCDLVNKEIKNKMDNVISQ 312
>sp|P15530|CD79B_MOUSE B-cell antigen receptor complex-associated protein beta-chain
precursor (B-cell-specific glycoprotein B29)
(Immunoglobulin-associated B29 protein) (IG-beta)
(CD79B)
Length = 228
Score = 29.6 bits (65), Expect = 4.6
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = -1
Query: 273 NGPISNSGLIRQHFPQHCIHFCSTQCGIVAHDV-DHCPRHFIIYLVPALSQLQSRYNMHN 97
NG + + + + I+FC +C H+V D C ++ L QL+ R + +
Sbjct: 99 NGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLDQLKRRNTLKD 158
Query: 96 GPITNSGLIRQLRLHLLV 43
G I LI+ L + L +
Sbjct: 159 GII----LIQTLLIILFI 172
>sp|Q09501|IFP1_CAEEL Intermediate filament protein ifp-1 (Intermediate filament protein
E1) (IF-E1) (Cel IF E1)
Length = 776
Score = 29.6 bits (65), Expect = 4.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 288 RYNSPNGPISNSGLIRQHFPQHCIHFCSTQCGIVAHDVDHCPR 160
R N+P+ + S L RQ++ H T GIV H H R
Sbjct: 371 RANAPSTQVIASALSRQNYSSISDHHSRTSSGIVQHTAHHAVR 413
>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4 (U3 snoRNP
protein imp4)
Length = 289
Score = 29.6 bits (65), Expect = 4.6
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Frame = +1
Query: 16 DASITLSNINKQMQAKLPNKPRVSDRTIVHVISRLQLRQGRNKIDDEMT---------GA 168
+ S L+ K+++ +PN R++ IV + L N I D + G
Sbjct: 93 EPSSRLAQFAKEVRLLIPNSYRLNRGNIV--VGSLVEAARANDITDIVILHEHRGIPDGL 150
Query: 169 VVDIVRNDPTLSAAKVNAMLREMLPNKPRVTDRTIRRVISRLQSRQGR 312
V+ + PTLS + N +LR +PN +++ + L S+ G+
Sbjct: 151 VISHLPYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGK 198
>sp|P53950|VAC7_YEAST Vacuolar segregation protein 7
Length = 1165
Score = 29.3 bits (64), Expect = 6.0
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +1
Query: 70 NKPRVSDRTIVHVISRLQLRQGRNKIDDEMTGAVVDIVRNDPTLSAAKVNAMLRE---ML 240
NKP++ +R +HV + ++ G N +DD +N P S N + +
Sbjct: 245 NKPKIIERPTMHVTNSREILLGENLLDDTK-------AKNAPANSTTHDNGPVANDGLRI 297
Query: 241 PNKPRVTDRTIRRVISRLQS-RQGRNKIDDEVTE 339
PN D + + ++ G+N+ +D+ ++
Sbjct: 298 PNHSNADDNENNNKMKKNKNINSGKNERNDDTSK 331
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,682,167
Number of Sequences: 369166
Number of extensions: 1224445
Number of successful extensions: 3189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3184
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)