Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_L20
(276 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7V9E5|PURL_PROMM Phosphoribosylformylglycinamidine synt... 36 0.024
sp|P58269|DPF3_MOUSE Zinc-finger protein Dpf3 (cer-d4) 31 0.78
sp|Q92784|DPF3_HUMAN Zinc-finger protein DPF3 (cer-d4) 30 1.3
sp|O93995|COQ3_CANAL Hexaprenyldihydroxybenzoate methyltran... 30 1.3
sp|P32657|CHD1_YEAST Chromo domain protein 1 30 2.3
sp|Q9WZN3|IF2_THEMA Translation initiation factor IF-2 29 3.0
sp|Q8KCD7|GRPE_CHLTE GrpE protein (HSP-70 cofactor) 29 3.9
sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence ele... 29 3.9
sp|Q45119|TNPA2_BACFR Transposase for insertion sequence el... 29 3.9
sp|Q60396|SPI24_APOSY Serine proteinase inhibitor 2.4 precu... 28 6.6
>sp|Q7V9E5|PURL_PROMM Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
Length = 794
Score = 36.2 bits (82), Expect = 0.024
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 24 GVNVKVDEEMEEMIRDLIRNDASVTLSNIDKQMQAKLPSKPRVSDRTIVHVISRLRVRQG 203
G N+ DE + +++ D D Q+QA S P VSD +V RLR +QG
Sbjct: 414 GSNISWDEILLKLLDDPTIASKRWVYRQYDHQVQANTVSAPGVSDAAVV----RLRPQQG 469
Query: 204 RKKIDDEMRG 233
+ +D+ RG
Sbjct: 470 KGSVDEVKRG 479
>sp|P58269|DPF3_MOUSE Zinc-finger protein Dpf3 (cer-d4)
Length = 356
Score = 31.2 bits (69), Expect = 0.78
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Frame = +3
Query: 18 GQGVNVKVDEEMEEMIRDL---IRNDASVTLSNIDKQMQAKLPSKPRVSDRTIVHVISRL 188
G+GV KVD EE I+++ + ND +V N ++ ++ +P K + R +
Sbjct: 123 GEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEEDLEEDVP-KRKNRTRGRARGSAGG 181
Query: 189 RVRQGRKKIDDEMRGGVCDI----VRNDPTLS 272
R R +D + VCDI +N P LS
Sbjct: 182 RRRHDAASQEDHDKPYVCDICGKRYKNRPGLS 213
>sp|Q92784|DPF3_HUMAN Zinc-finger protein DPF3 (cer-d4)
Length = 224
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 18 GQGVNVKVDEEMEEMIRDL---IRNDASVTLSNIDKQMQAKLPSKPRVSDRT 164
G+GV KVD EE I+++ + ND +V N ++ ++ +P + DRT
Sbjct: 124 GEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKR---KDRT 172
>sp|O93995|COQ3_CANAL Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial
precursor (Dihydroxyhexaprenylbenzoate
methyltransferase) (3,4-dihydroxy-5-hexaprenylbenzoate
methyltransferase) (DHHB methyltransferase) (DHHB-MT)
(DHHB-MTase)
Length = 327
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3
Query: 15 LGQGVNVKVDEEMEEMIRDLIRNDASVTLSNI 110
L QG+ K+DE+ +EM RD I ND+S+T+ ++
Sbjct: 111 LPQGIKNKIDED-QEMRRDEILNDSSLTVLDV 141
>sp|P32657|CHD1_YEAST Chromo domain protein 1
Length = 1468
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 42 DEEMEEMIRDLIRNDASVTLSNIDKQMQAKLPSK 143
DEE EE I DL R L + K ++ LPSK
Sbjct: 576 DEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSK 609
>sp|Q9WZN3|IF2_THEMA Translation initiation factor IF-2
Length = 690
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +3
Query: 24 GVNVK-----VDEEMEEMIRDLIRNDASVTLSNIDKQMQAKLPSKPR 149
GVNVK VDEEM +I DL+ D +AK PSKP+
Sbjct: 28 GVNVKSHMSYVDEEMANIIIDLLEED----------NRKAKQPSKPK 64
>sp|Q8KCD7|GRPE_CHLTE GrpE protein (HSP-70 cofactor)
Length = 194
Score = 28.9 bits (63), Expect = 3.9
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 51 MEEMIRDLIR--NDASVTLSNIDKQMQAKLPSKPRVSDRTIVHV-ISRLRVRQGRKKIDD 221
+E ++R+L+ +D +S+I +MQA +KP + ++H L R+G K+I
Sbjct: 85 LENIVRELLPLIDDLKRLMSHIPAEMQAMAEAKPFIEGVELIHKNFMSLLERKGVKEI-- 142
Query: 222 EMRGGVCDI 248
E +G + D+
Sbjct: 143 EAKGKMLDV 151
>sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence element IS21-like
Length = 519
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 45 EEMEEMIRDLIRNDASVTLSNIDKQMQAKLPSKPRVSDRTIVHVISRLRVRQG-RKKIDD 221
E E+ +R + ++ + I ++ P PRV +RTI + R+R + G KK++
Sbjct: 68 ENYEQYVRANLEEYPYISAARIHDWLKECYPDFPRVCNRTISGFVERVRKKYGIGKKVET 127
Query: 222 EMR 230
R
Sbjct: 128 HKR 130
>sp|Q45119|TNPA2_BACFR Transposase for insertion sequence element IS21-like
Length = 520
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 54 EEMIRDLIRNDASVTLSNIDKQMQAKLPSKPRVSDRTIVHVISRLRVRQG 203
EE +R + ++ + + ++ P PRV D+T+ + + R+R + G
Sbjct: 71 EEYVRGTLEEYPYISAARMHDWLKECYPDFPRVCDKTVFNFVDRIRRKYG 120
>sp|Q60396|SPI24_APOSY Serine proteinase inhibitor 2.4 precursor
Length = 418
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/65 (23%), Positives = 36/65 (55%)
Frame = +3
Query: 27 VNVKVDEEMEEMIRDLIRNDASVTLSNIDKQMQAKLPSKPRVSDRTIVHVISRLRVRQGR 206
V + +++E++ DL+ + V ++ I + + K+P PRV+ ++ ++ + V+
Sbjct: 182 VRKETQGKIQELLSDLVERTSMVLVNYIYFKGKWKMPFDPRVTLKSEFYLDEKRSVKVPM 241
Query: 207 KKIDD 221
KI+D
Sbjct: 242 MKIED 246
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,536,644
Number of Sequences: 369166
Number of extensions: 533306
Number of successful extensions: 1629
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 68,354,980
effective HSP length: 61
effective length of database: 57,086,145
effective search space used: 1712584350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)