Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_D11
(712 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27571|XIST_MOUSE X inactive-specific transcript protein 35 0.20
sp|Q45119|TNPA2_BACFR Transposase for insertion sequence el... 33 0.57
sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence ele... 33 0.98
sp|Q03103|ERO1_YEAST Endoplasmic oxidoreductin 1 precursor ... 31 2.8
sp|O22212|PRP4_ARATH U4/U6 small nuclear ribonucleoprotein ... 30 6.3
sp|P15530|CD79B_MOUSE B-cell antigen receptor complex-assoc... 30 8.3
sp|Q09501|IFP1_CAEEL Intermediate filament protein ifp-1 (I... 30 8.3
>sp|P27571|XIST_MOUSE X inactive-specific transcript protein
Length = 298
Score = 35.0 bits (79), Expect = 0.20
Identities = 28/110 (25%), Positives = 50/110 (45%)
Frame = -3
Query: 566 VHSPLMHSVLIDYYCSVTSSSILFRPCRDCNLDITLLMVQSVTLGLFGSISRNIAFTFAA 387
V + L+H L + C + S LF C C L I + ++ ++ +S ++ ++A
Sbjct: 74 VSNSLLHLFLPSFACLLLSFVCLF--CLQCVLPIPMFLLHVLSCRALSFVSLSLVPVWSA 131
Query: 386 LNVGSLHTMSTTALVISSSILFRPCRNCNLDITCKMVLSVTLGLFGSFVC 237
L+ ++ + IS S F P +L +TC M S+ L L +C
Sbjct: 132 LSSLAMALCFIYLVAISLSFSFTPAFRDSLWVTCCMHPSLFLVLTPLVLC 181
>sp|Q45119|TNPA2_BACFR Transposase for insertion sequence element IS21-like
Length = 520
Score = 33.5 bits (75), Expect = 0.57
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 376 PTLSAAKVNAMLREMLPNKPRVTDWTIRRVISRLQSRQGRNK 501
P +SAA+++ L+E P+ PRV D T+ + R++ + G K
Sbjct: 82 PYISAARMHDWLKECYPDFPRVCDKTVFNFVDRIRRKYGIGK 123
Score = 30.0 bits (66), Expect = 6.3
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 169 EEMVRFLIRNDASITLSNINKQMQTKLPNKPRVTDRTILHVISRLQLRQGRNK 327
EE VR + I+ + ++ ++ P+ PRV D+T+ + + R++ + G K
Sbjct: 71 EEYVRGTLEEYPYISAARMHDWLKECYPDFPRVCDKTVFNFVDRIRRKYGIGK 123
>sp|Q64NF0|TPA1_BACFR Transposase for insertion sequence element IS21-like
Length = 519
Score = 32.7 bits (73), Expect = 0.98
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 376 PTLSAAKVNAMLREMLPNKPRVTDWTIRRVISRLQSRQGRNK 501
P +SAA+++ L+E P+ PRV + TI + R++ + G K
Sbjct: 82 PYISAARIHDWLKECYPDFPRVCNRTISGFVERVRKKYGIGK 123
>sp|Q03103|ERO1_YEAST Endoplasmic oxidoreductin 1 precursor (Endoplasmic oxidoreductase
protein 1)
Length = 563
Score = 31.2 bits (69), Expect = 2.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +2
Query: 569 LWELLPYKP--SFCDLLHRSIDNLVINLTVQ 655
LW++ PY P SFCDL+++ I N + N+ Q
Sbjct: 282 LWKIQPYLPEFSFCDLVNKEIKNKMDNVISQ 312
>sp|O22212|PRP4_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein
Length = 554
Score = 30.0 bits (66), Expect = 6.3
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Frame = +1
Query: 7 KQHRGISVEQLESALIEAFPERAALGTAEISDLIRLNKWRRLGQAVNVKVDEEMEEMVR- 183
KQ R + L+ L++ RAA +D ++ RRLG+ + + ++EME R
Sbjct: 95 KQVRERQEKALQDLLVK---RRAAAMAVPTNDKAVRDRLRRLGEPITLFGEQEMERRARL 151
Query: 184 --FLIRNDASITLSNINKQMQTKLPNKPRVTDRTILHVI---SRLQLRQGRNKIDD-EIT 345
L R D + L + K + + K V D + + +LR+ R +I +
Sbjct: 152 TQLLTRYDINGQLDKLVKDHEEDVTPKEEVDDEVLEYPFFTEGPKELREARIEIAKFSVK 211
Query: 346 RAVVDI 363
RA V I
Sbjct: 212 RAAVRI 217
>sp|P15530|CD79B_MOUSE B-cell antigen receptor complex-associated protein beta-chain
precursor (B-cell-specific glycoprotein B29)
(Immunoglobulin-associated B29 protein) (IG-beta)
(CD79B)
Length = 228
Score = 29.6 bits (65), Expect = 8.3
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 456 NGPISNSGLIRQHFPQHCIHFCSTQCGIVAHDV-DHCPRYFIIYLVPALSQLQSRYNMQN 280
NG + + + + I+FC +C H+V D C ++ L QL+ R +++
Sbjct: 99 NGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLDQLKRRNTLKD 158
Query: 279 GPISNSGLIRQLRLHLLV 226
G I LI+ L + L +
Sbjct: 159 GII----LIQTLLIILFI 172
>sp|Q09501|IFP1_CAEEL Intermediate filament protein ifp-1 (Intermediate filament protein
E1) (IF-E1) (Cel IF E1)
Length = 776
Score = 29.6 bits (65), Expect = 8.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 471 RYNSPNGPISNSGLIRQHFPQHCIHFCSTQCGIVAHDVDHCPR 343
R N+P+ + S L RQ++ H T GIV H H R
Sbjct: 371 RANAPSTQVIASALSRQNYSSISDHHSRTSSGIVQHTAHHAVR 413
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,274,705
Number of Sequences: 369166
Number of extensions: 1708084
Number of successful extensions: 4565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4562
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)