Planaria EST Database

DrC_00076

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00076
         (628 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q97WH0|RAD50_SULSO  DNA double-strand break repair rad50 ...    34   0.27 
sp|Q9CI63|P2IN_LACLA  Prophage ps2 probable integrase (Int-TnX)    33   0.60 
sp|Q48262|NIXA_HELPY  High-affinity nickel-transport protein...    32   1.0  
sp|Q9ZM74|NIXA_HELPJ  High-affinity nickel-transport protein...    32   1.3  
sp|P19879|MIME_BOVIN  Mimecan precursor (Osteoglycin) [Conta...    32   1.7  
sp|P20774|MIME_HUMAN  Mimecan precursor (Osteoglycin) (Osteo...    31   2.3  
sp|P42073|REF2_YEAST  RNA end formation protein 2                  31   3.0  
sp|Q8N3Y1|FBXW8_HUMAN  F-box/WD-repeat protein 8 (F-box and ...    31   3.0  
sp|P21249|ANT1_ONCVO  Major antigen (Myosin-like antigen)          31   3.0  
sp|Q8TT60|HEM1_METAC  Glutamyl-tRNA reductase (GluTR)              30   3.9  

>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
          Length = 864

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 22/66 (33%), Positives = 35/66 (53%)
 Frame = +2

Query: 320 LDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKL 499
           LD +EQ    N   TV+     +L+L KD  KLE +   ++ + K + D+  +   +EK 
Sbjct: 178 LDRIEQDYN-NFKKTVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKK 233

Query: 500 RNKYFK 517
           RN+Y K
Sbjct: 234 RNQYLK 239

>sp|Q9CI63|P2IN_LACLA Prophage ps2 probable integrase (Int-TnX)
          Length = 382

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +2

Query: 368 KGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKLRNKYFKDLDLEAVV 541
           K  LN I D   DL  +E +PA+  ++ K +  +       EK++NKY +  +L+A++
Sbjct: 131 KSTLNLIFDYAVDLEYIEYNPARKAKLPKKIQTVKD----LEKIQNKYLEQNELKALL 184

>sp|Q48262|NIXA_HELPY High-affinity nickel-transport protein nixA
          Length = 331

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 23/77 (29%), Positives = 40/77 (51%)
 Frame = +2

Query: 293 PLTNIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLS 472
           P+   +GG++ TL       +F  + GLLN I+ L  DLLK+       + +S+  N+  
Sbjct: 102 PMLEEIGGVVGTLVS----GLFLLIIGLLNAIILL--DLLKIFKKSHSNESLSQQQNEEI 155

Query: 473 SKGISFEKLRNKYFKDL 523
            + ++   L N++FK L
Sbjct: 156 ERLLTSRGLLNRFFKPL 172

>sp|Q9ZM74|NIXA_HELPJ High-affinity nickel-transport protein nixA
          Length = 331

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 22/77 (28%), Positives = 40/77 (51%)
 Frame = +2

Query: 293 PLTNIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLS 472
           P+   +GG++ TL       +F  + GLLN I+ +  DLLK+       + +S+  N+  
Sbjct: 102 PMLEEIGGVVGTLVS----GLFLLIIGLLNAIILI--DLLKIFKKSHSNESLSRQQNEEI 155

Query: 473 SKGISFEKLRNKYFKDL 523
            + ++   L N++FK L
Sbjct: 156 ERLLTSRGLLNRFFKPL 172

>sp|P19879|MIME_BOVIN Mimecan precursor (Osteoglycin) [Contains: Corneal keratan sulfate
           proteoglycan 25 core protein (KSPG25 protein);
           Osteoinductive factor (OIF)]
          Length = 299

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +2

Query: 302 NIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKG 481
           +  G L++ +E       FS +  LL E+      LLKL   P KL   +   N + S+G
Sbjct: 150 DFTGNLIEDIED----GTFSKLS-LLEELTLAENQLLKLPVLPPKLTLFNAKYNKIKSRG 204

Query: 482 I---SFEKLRNKYFKDLDLEAV 538
           I   +F+KL N  F  LD  A+
Sbjct: 205 IKANTFKKLHNLSFLYLDHNAL 226

>sp|P20774|MIME_HUMAN Mimecan precursor (Osteoglycin) (Osteoinductive factor) (OIF)
          Length = 298

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +2

Query: 302 NIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKG 481
           +  G L++ +E       FS +  LL E+      LLKL   P KL   +   N + S+G
Sbjct: 149 DFTGNLIEDIED----GTFSKLS-LLEELSLAENQLLKLPVLPPKLTLFNAKYNKIKSRG 203

Query: 482 I---SFEKLRNKYFKDLDLEAV 538
           I   +F+KL N  F  LD  A+
Sbjct: 204 IKANAFKKLNNLTFLYLDHNAL 225

>sp|P42073|REF2_YEAST RNA end formation protein 2
          Length = 533

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -3

Query: 317 DLQLYXXXXXXXXIYPNQVIRLFHLKVHLEVHPKVR----HYFLHLLPKLHP 174
           D+QLY         Y NQ+I+L H K H    P        +F++ LPK  P
Sbjct: 76  DIQLYSGLKSMYLDYLNQLIKLKHEKQHHSTPPIANDVSLDFFVNQLPKFSP 127

>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
           only protein 29)
          Length = 598

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 357 NILRGIVCSSVSKRPPTIFVSGNPD 283
           N+LR   C ++S  PP + VSGN D
Sbjct: 430 NVLRDFTCVNLSDSPPNLMVSGNMD 454

>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
          Length = 2022

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 296  LTNIVGGLLDTLEQ--TIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDL 469
            LTN +  L  T+ Q  TI   I   +   LNE   L  DL  L+   A+++   K++ND 
Sbjct: 1675 LTNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND- 1733

Query: 470  SSKGISFEKLRNKYFKDLDL 529
              K    EK+R    K ++L
Sbjct: 1734 --KYDELEKIRASLIKRIEL 1751

>sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR)
          Length = 460

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +2

Query: 383 EILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKLRNKYFKDLDLEAVVKANVDVK 562
           E LD+V  +  LE D AKL++I++   +    G + E+   K    +  +AVVK    VK
Sbjct: 400 EFLDVVSRVFCLEKDKAKLEKINQAKFEQIEPGCAKEQAAVKEQTAVKEQAVVKEQAAVK 459

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,621,017
Number of Sequences: 369166
Number of extensions: 683274
Number of successful extensions: 2450
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2450
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00076

  1. Dr_sW_025_O13
  2. Dr_sW_002_P11
  3. Dr_sW_010_J20
  4. Dr_sW_009_J01
  5. Dr_sW_006_D11
  6. Dr_sW_010_K13
  7. Dr_sW_002_M14
  8. Dr_sW_009_L16
  9. Dr_sW_010_M13
  10. Dr_sW_028_C22
  11. Dr_sW_016_A12
  12. Dr_sW_006_C03
  13. Dr_sW_007_P18
  14. Dr_sW_019_P21
  15. Dr_sW_005_B04
  16. Dr_sW_006_E14
  17. Dr_sW_008_B06
  18. Dr_sW_024_F15
  19. Dr_sW_006_J24
  20. Dr_sW_007_J17
  21. Dr_sW_010_P04
  22. Dr_sW_012_I01
  23. Dr_sW_021_G07
  24. Dr_sW_008_O04
  25. Dr_sW_020_C05
  26. Dr_sW_028_M10
  27. Dr_sW_001_B21
  28. Dr_sW_024_G07
  29. Dr_sW_024_J07
  30. Dr_sW_016_A19
  31. Dr_sW_026_F07
  32. Dr_sW_006_C19
  33. Dr_sW_021_H22
  34. Dr_sW_006_G21